{"id":23057288,"url":"https://github.com/applicativesystem/rust-pangenome-matcher","last_synced_at":"2025-08-15T06:32:29.105Z","repository":{"id":267666370,"uuid":"901500559","full_name":"applicativesystem/rust-pangenome-matcher","owner":"applicativesystem","description":"rust pangenome matcher","archived":false,"fork":false,"pushed_at":"2024-12-11T17:34:05.000Z","size":3608,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-11T18:26:38.000Z","etag":null,"topics":["bioinformatics","genome-alignment","genome-analysis","genome-bioinformatics","pangenome-alignment","pangenomic-analysis","pangenomics"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-12-10T19:18:07.000Z","updated_at":"2024-12-11T17:35:17.000Z","dependencies_parsed_at":"2024-12-11T18:39:48.482Z","dependency_job_id":null,"html_url":"https://github.com/applicativesystem/rust-pangenome-matcher","commit_stats":null,"previous_names":["applicativesystem/rust-pangenome-matcher"],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-pangenome-matcher","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-pangenome-matcher/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-pangenome-matcher/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-pangenome-matcher/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/rust-pangenome-matcher/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":229897445,"owners_count":18141135,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","genome-alignment","genome-analysis","genome-bioinformatics","pangenome-alignment","pangenomic-analysis","pangenomics"],"created_at":"2024-12-16T02:11:49.665Z","updated_at":"2024-12-16T02:11:50.210Z","avatar_url":"https://github.com/applicativesystem.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# rust-pangenome-tools\n - writing all pangenome tools in rust. \n - This part compares the two pangenome alignment with the same query and a different reference and anchors the query across both. \n - general note: Incase of Golang and RUST, please see the last commit message and if it says compiled binary then it is completed or else still in development version.\n\n ```\n cargo build\n \n ```\n λ gauravsablok rust-pangenome-matcher → λ git main* → ./target/debug/rust-pangenome-matcher -h\n Usage: rust-pangenome-matcher \u003cPAFALIGNMENT1\u003e \u003cPAFALIGNMENT2\u003e\n \n Arguments:\n  \u003cPAFALIGNMENT1\u003e  please provide the path to the first alignment file\n  \u003cPAFALIGNMENT2\u003e  please provide the path to the second alignment file\n\n Options:\n  -h, --help     Print help\n  -V, --version  Print version\n\n ```\n\n ```\n - to run the binary\n ```\nλ gauravsablok rust-pangenome-matcher → λ git main* → ./target/debug/rust-pangenome-matcher ./sample-files/test1.paf ./sample-files/test2.paf\nThe comparative reference files have been written\nThe comparative query files have been written\nThe pangenome matcher has produced the results: The pangenome alignments have been parsed and the comparative results have been written\n\n ```\n Gaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Frust-pangenome-matcher","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Frust-pangenome-matcher","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Frust-pangenome-matcher/lists"}