{"id":23057285,"url":"https://github.com/applicativesystem/rust-pangenome-tools","last_synced_at":"2025-08-15T06:32:26.366Z","repository":{"id":267409153,"uuid":"900423325","full_name":"applicativesystem/rust-pangenome-tools","owner":"applicativesystem","description":"rust deeplearning and segmentation from the aligned reads","archived":false,"fork":false,"pushed_at":"2024-12-10T06:36:59.000Z","size":2,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-10T07:40:53.153Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-12-08T18:29:37.000Z","updated_at":"2024-12-10T06:37:02.000Z","dependencies_parsed_at":"2024-12-10T07:40:55.083Z","dependency_job_id":"e68526f1-4b92-4b0a-af41-b17602c10920","html_url":"https://github.com/applicativesystem/rust-pangenome-tools","commit_stats":null,"previous_names":["applicativesystem/rust-pangenome-tools"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-pangenome-tools","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-pangenome-tools/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-pangenome-tools/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-pangenome-tools/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/rust-pangenome-tools/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":229897445,"owners_count":18141135,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-16T02:11:48.867Z","updated_at":"2024-12-16T02:11:49.379Z","avatar_url":"https://github.com/applicativesystem.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# rust-pangenome-tools\n - writing all pangenome tools in rust. \n - This part summarizes all the pangenome alignments. \n - estimates and gives all descriptive statistics on the pangenome alignment. \n - general note: Incase of Golang and RUST, please see the last commit message and if it says compiled binary then it is completed or else still in development version.\n ```\n cargo build\n \n ```\n\n ```\n λ gauravsablok rust-pangenome-tools → λ git main* → ./rust-pangenome-tools -h\n Usage: rust-pangenome-tools \u003cPAFALIGNMENT\u003e\n\n Arguments:\n  \u003cPAFALIGNMENT\u003e  please provide the path to the alignment file\n\n Options:\n  -h, --help     Print help\n  -V, --version  Print version\n\n ```\n - to run the binary\n\n ```\n λ fedora rust-pangenome-tools → λ git main* → ./target/debug/rust-pangenome-tools ./sample-files/sample.paf\n The total reference aligned sum for the pangenome is 126794249\n The total reference portion of the aligned query is 127158955\n The mode for the reference pangenome alignment is: 612532\n The mode for the query pangenome alignment is 614294\n The pangenome statistics analyzer: The paf analyzer has finished and all the pangenome alignment statistics are given below:\n ```\n\n Gaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Frust-pangenome-tools","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Frust-pangenome-tools","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Frust-pangenome-tools/lists"}