{"id":22425027,"url":"https://github.com/applicativesystem/rust-view-aln-wasm","last_synced_at":"2025-08-01T08:32:50.190Z","repository":{"id":265146319,"uuid":"895272953","full_name":"applicativesystem/rust-view-aln-wasm","owner":"applicativesystem","description":"rust embedded approach for genome alignments to wasm web assembly","archived":false,"fork":false,"pushed_at":"2024-11-27T22:40:11.000Z","size":183,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-11-27T23:24:52.786Z","etag":null,"topics":["bioinformatics","genome-analysis","genome-assembly","genome-browser","rust-crate","rustlang","webassembly","webassembly-lang"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-11-27T22:23:13.000Z","updated_at":"2024-11-27T22:40:14.000Z","dependencies_parsed_at":"2024-11-27T23:35:11.660Z","dependency_job_id":null,"html_url":"https://github.com/applicativesystem/rust-view-aln-wasm","commit_stats":null,"previous_names":["applicativesystem/rust-view-aln-wasm"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-view-aln-wasm","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-view-aln-wasm/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-view-aln-wasm/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-view-aln-wasm/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/rust-view-aln-wasm/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":228356406,"owners_count":17907191,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","genome-analysis","genome-assembly","genome-browser","rust-crate","rustlang","webassembly","webassembly-lang"],"created_at":"2024-12-05T19:12:06.131Z","updated_at":"2024-12-05T19:12:06.746Z","avatar_url":"https://github.com/applicativesystem.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# rust-view-multi-aln\n\n- started a webassembly approach for genomic alignments for plants and metagenomes.\n- will convert this with additional svelte into a complete biowasm web assembly, so give any BAM, CRAM, SAM file and it will show the genome.\n- from reads to entire genome and metagenome visualization.\n- it will make the alignments specific for each file and in case of the BAM, SAM and others will also integrate the Gosling. \n- **Svelete Integration to follow for the complete webassembly based genome browser as of now it uses simple browser.**\n- general note: incase of golang and RUST, please see the last commit message and if the message says final and binary released, means code completed else in development phase. \n\n![](https://github.com/applicativesystem/rust-view-aln-wasm/blob/main/metagenome_alignment.png)\n\n```\ncargo build\n\n```\n```\nλ gauravsablok rust-view-multi-aln → λ git master* → ./target/debug/rust-view-multi-aln -h\nUsage: rust-view-multi-aln \u003cALIGNMENT_ARG\u003e\n\nArguments:\n  \u003cALIGNMENT_ARG\u003e  please provide the path to the alignment file\n\nOptions:\n  -h, --help     Print help\n  -V, --version  Print version\n\n```\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Frust-view-aln-wasm","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Frust-view-aln-wasm","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Frust-view-aln-wasm/lists"}