{"id":20793500,"url":"https://github.com/applicativesystem/short-long-read-alignment-codegetter","last_synced_at":"2025-05-11T14:33:26.139Z","repository":{"id":262142680,"uuid":"845188980","full_name":"applicativesystem/short-long-read-alignment-codegetter","owner":"applicativesystem","description":"codegetter for illumina, pacbio and oxford long read and short reads","archived":false,"fork":false,"pushed_at":"2024-08-20T20:08:59.000Z","size":1,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-11-10T20:18:18.212Z","etag":null,"topics":["bioinformatics","genome-analysis","illumina","illumina-sequencing","pacbio-hifi-sequencing-reads","pacbio-sequencing","shell","shellscript"],"latest_commit_sha":null,"homepage":"","language":"Shell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-08-20T18:55:25.000Z","updated_at":"2024-09-11T13:18:12.000Z","dependencies_parsed_at":"2024-11-10T20:18:25.499Z","dependency_job_id":null,"html_url":"https://github.com/applicativesystem/short-long-read-alignment-codegetter","commit_stats":null,"previous_names":["applicativesystem/short-long-read-alignment-codegetter"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fshort-long-read-alignment-codegetter","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fshort-long-read-alignment-codegetter/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fshort-long-read-alignment-codegetter/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fshort-long-read-alignment-codegetter/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/short-long-read-alignment-codegetter/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":225061935,"owners_count":17414821,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","genome-analysis","illumina","illumina-sequencing","pacbio-hifi-sequencing-reads","pacbio-sequencing","shell","shellscript"],"created_at":"2024-11-17T16:09:09.963Z","updated_at":"2024-11-17T16:09:10.517Z","avatar_url":"https://github.com/applicativesystem.png","language":"Shell","funding_links":[],"categories":[],"sub_categories":[],"readme":"# alignments-code-generator\n\n- a shell code getter for genomics alignments for the illumina and long reads from pacbio and the oxford nanopore.\n- bringing all the alignments tools for the illumina, pacbio and oxford nanopre under one hood.\n- to get the code save the file and run as\n\n\n```\nsh  illumina_pacbio_oxfordnanopore_code_getter.sh\n```\nGaurav Sablok \\\nUniversity of Potsdam \\\nPotsdam,Germany\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fshort-long-read-alignment-codegetter","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fshort-long-read-alignment-codegetter","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fshort-long-read-alignment-codegetter/lists"}