{"id":23057263,"url":"https://github.com/applicativesystem/tair-gff-ids-analyzer","last_synced_at":"2025-08-15T06:32:23.704Z","repository":{"id":262142684,"uuid":"845685488","full_name":"applicativesystem/tair-gff-ids-analyzer","owner":"applicativesystem","description":"ease of access gff files from tair for reading tair ids.","archived":false,"fork":false,"pushed_at":"2024-08-21T19:54:34.000Z","size":4881,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-11-10T20:18:18.888Z","etag":null,"topics":["arabidopsis","arabidopsis-thalian","bioinformatics","genome-analysis","genome-annotation","genome-informatics","gff","gff-toolkit","gff3","tair","tair3"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-08-21T18:17:28.000Z","updated_at":"2024-09-11T13:58:20.000Z","dependencies_parsed_at":"2024-11-10T20:18:31.277Z","dependency_job_id":null,"html_url":"https://github.com/applicativesystem/tair-gff-ids-analyzer","commit_stats":null,"previous_names":["applicativesystem/tair-gff-ids-analyzer"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Ftair-gff-ids-analyzer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Ftair-gff-ids-analyzer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Ftair-gff-ids-analyzer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Ftair-gff-ids-analyzer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/tair-gff-ids-analyzer/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":229897445,"owners_count":18141135,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["arabidopsis","arabidopsis-thalian","bioinformatics","genome-analysis","genome-annotation","genome-informatics","gff","gff-toolkit","gff3","tair","tair3"],"created_at":"2024-12-16T02:11:45.811Z","updated_at":"2024-12-16T02:11:46.333Z","avatar_url":"https://github.com/applicativesystem.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# tair-gff-ids\n\n- A set of functions which will provide easy access and cleaned gff from tair and uses a dataframe and datascience approach to get the systematic tair ids and their coordinates from the tair 10 gff version.\n- It can be applied to any version of the tair for getting the systematic retrival of the tair ids.\n- Download the tair 10 or any other gff3 version and use this to make a clean nested iterators of the genomic coordinates.\n- It can be applied to any genomic annotation as long as the gff looks like the tair ones.\n- This function is a part of the tairaccession package (pip install tairaccession), however you can use this separately and it is completely usable.\n\nGaurav Sablok \\\nUniversity of Potsdam \\\nPotsdam,Germany \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Ftair-gff-ids-analyzer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Ftair-gff-ids-analyzer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Ftair-gff-ids-analyzer/lists"}