{"id":22589699,"url":"https://github.com/arnoudbuzing/wolfram-coronavirus","last_synced_at":"2026-01-07T06:43:56.485Z","repository":{"id":47670195,"uuid":"237480015","full_name":"arnoudbuzing/wolfram-coronavirus","owner":"arnoudbuzing","description":"Wolfram Language code and notebooks related to the coronavirus outbreak","archived":false,"fork":false,"pushed_at":"2021-08-15T03:37:50.000Z","size":126632,"stargazers_count":35,"open_issues_count":1,"forks_count":6,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-02-02T18:44:09.250Z","etag":null,"topics":["2019-ncov","coronavirus","coronavirus-tracking","covid-19","data-science","mathematica","ncov-2019","wolfram-language","wuhan","wuhan-coronavirus-outbreak"],"latest_commit_sha":null,"homepage":null,"language":"Mathematica","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/arnoudbuzing.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-01-31T17:22:25.000Z","updated_at":"2024-06-07T02:57:14.000Z","dependencies_parsed_at":"2022-08-22T02:41:31.927Z","dependency_job_id":null,"html_url":"https://github.com/arnoudbuzing/wolfram-coronavirus","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnoudbuzing%2Fwolfram-coronavirus","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnoudbuzing%2Fwolfram-coronavirus/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnoudbuzing%2Fwolfram-coronavirus/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnoudbuzing%2Fwolfram-coronavirus/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/arnoudbuzing","download_url":"https://codeload.github.com/arnoudbuzing/wolfram-coronavirus/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246076913,"owners_count":20719894,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["2019-ncov","coronavirus","coronavirus-tracking","covid-19","data-science","mathematica","ncov-2019","wolfram-language","wuhan","wuhan-coronavirus-outbreak"],"created_at":"2024-12-08T08:14:29.662Z","updated_at":"2026-01-07T06:43:56.460Z","avatar_url":"https://github.com/arnoudbuzing.png","language":"Mathematica","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Coronavirus\n\n![Coronavirus surface details](images/ncov-detailed.png)\n\n## Wolfram Language code and notebooks related to the coronavirus outbreak\n\n[![View notebooks](https://wolfr.am/HAAhzkRq)](https://wolfr.am/JZNRriEE)\n\n#### Sources\n\nDashboard:\n\n* [Dashboard with data](https://arnoudbuzing.github.io/wolfram-coronavirus/)\n\nTwitch live streams:\n\n* [Recording of my live Twitch session](https://www.twitch.tv/videos/547321229)\n* [Coronavirus Data Exploration - Wolfram Livecoding with Students](https://www.twitch.tv/videos/548254391)\n\nWolfram Data Repository (datasets):\n\n* [Top level search](https://datarepository.wolframcloud.com/search/?i=coronavirus)\n* [Genetic Sequences for Novel Coronavirus 2019-nCoV from Wuhan, China](https://datarepository.wolframcloud.com/resources/Genetic-Sequences-for-Novel-Coronavirus-2019-nCoV-from-Wuhan-China)\n* [Epidemic Data for Novel Coronavirus 2019-nCoV from Wuhan, China](https://datarepository.wolframcloud.com/resources/Epidemic-Data-for-Novel-Coronavirus-2019-nCoV-from-Wuhan-China)\n* [Patient Medical Data for Novel Coronavirus 2019-nCoV from Wuhan, China](https://datarepository.wolframcloud.com/resources/Patient-Medical-Data-for-Novel-Coronavirus-2019-nCoV-from-Wuhan-China)\n\nPosts on the Wolfram Community:\n\n* [UPDATES -- Resources For Novel Coronavirus 2019-nCoV Wuhan China](https://community.wolfram.com/groups/-/m/t/1872608)\n* [Genome analysis and the 2019-nCov](https://community.wolfram.com/groups/-/m/t/1874816)\n* [Visualizing Sequence Alignments from the 2019-nCov](https://community.wolfram.com/groups/-/m/t/1875352)\n* [Mapping Wuhan coronavirus outbreak (2019-nCoV)](https://community.wolfram.com/groups/-/m/t/1868945)\n\n### Index to notebooks \n\n| file | description |\n| --- | --- |\n| Electron-microscope-image.nb | imports an image of a cell surrounded by multiple coronoviruses |\n| ExternalIdentifier-Coronavirus.nb\t| exploration of WikiData topics related to coronavirus |\n| GeoBubbleChart-Analysis.nb | analysis of virus spread in China itself |\n| Mapping_Wuhan_Coronavirus_in_China.nb\t| notebook from Joffre's community post |\n| Patient-Medical-Data-Analysis.nb | analysis on patient medical data |\n| ResourceData-Objects.nb\t| utility notebook to get the latest resource data object related to coronavirus |\n| TimeSeries-Analysis.nb | time series analysis of epidemic data |\n| Twitter-Analysis.nb\t| analyses mentions on twitter of 'coronavirus'; makes a wordcloud |\n| WHO-situation-reports.nb | imports PDF files as images |\n| bno-scraping-code.nb | data scraping from BNO website |\n| cdc-media-images.nb\t| imports of CDC public domain images |\n| china-geographics.nb | geographical plots for Chinese provinces |\n| coronavirus-3d-models.nb | 3d protein models related to coronavirus |\n| coronavirus-plots.nb | various coronavirus related plots and images |\n| dna-graphs.nb\t| analyse fasta sequence as 3d graphs |\n| fasta-sequences.nb |\tGenBank sequence analysis |\n| genbank-sequence.nb\t| GenBank sequence analysis |\n| geographical-data.nb | notebook to create the animation for the global spreading of the virus |\n| github-repos.nb | analysis of coronavirus github repos |\n\n## Results\n\n### Hospital capacity\n\n![Hospital capacity](images/hospital-capacity.gif)\n\n### Province graph\n\n![Province graph](images/province-graph.png)\n\n### Animation of global spread of Coronavirus\n\n![Animation of global spread of Coronavirus](images/out.gif)\n\n### Confirmed cases\n\nPlot of confirmed cases of the Coronavirus\n\n![Plot of confirmed cases of the Coronavirus](images/confirmed-cases.png)\n\nLog plot of confirmed cases of the Coronavirus\n\n![Log plot of confirmed cases of the Coronavirus](images/confirmed-cases-log.png)\n\nConfirmed cases for 2/4/2020:\n\n![Confirmed cases for 2/4/2020](images/confirmed-cases-02042020.png)\n\n### Images\n\n![Image of Coronavirus](images/coronavirus.png)\n\n![Another image of Coronavirus](images/coronavirus-2.png)\n\nGitHub topic wordcloud for Coronavirus:\n\n![Image of GitHub topic wordcloud](images/github-topic-wordcloud.png)\n\n### 3D Models\n\nProtease ribbon (source: https://3dprint.nih.gov/discover/3DPX-012893):\n\n![Image of protease ribbon](images/ribbon.png)\n\nProtease surface (same source):\n\n![Image of protease surface](images/surface.png)\n\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Farnoudbuzing%2Fwolfram-coronavirus","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Farnoudbuzing%2Fwolfram-coronavirus","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Farnoudbuzing%2Fwolfram-coronavirus/lists"}