{"id":24835937,"url":"https://github.com/arosh/vaa3d-sigen","last_synced_at":"2025-10-28T22:48:45.888Z","repository":{"id":115150419,"uuid":"49405810","full_name":"arosh/Vaa3D-SIGEN","owner":"arosh","description":"SImulation system for Geometrical and Electrical properties of Neuron","archived":false,"fork":false,"pushed_at":"2016-03-29T14:27:22.000Z","size":11993,"stargazers_count":1,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-10-28T22:48:44.961Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://github.com/Vaa3D/vaa3d_tools/tree/master/released_plugins/v3d_plugins/bigneuron_hide_ikeno_SIGEN","language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/arosh.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2016-01-11T06:06:15.000Z","updated_at":"2017-10-16T09:52:16.000Z","dependencies_parsed_at":"2024-05-12T01:45:49.643Z","dependency_job_id":null,"html_url":"https://github.com/arosh/Vaa3D-SIGEN","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/arosh/Vaa3D-SIGEN","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arosh%2FVaa3D-SIGEN","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arosh%2FVaa3D-SIGEN/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arosh%2FVaa3D-SIGEN/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arosh%2FVaa3D-SIGEN/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/arosh","download_url":"https://codeload.github.com/arosh/Vaa3D-SIGEN/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arosh%2FVaa3D-SIGEN/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":281527386,"owners_count":26516845,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-28T02:00:06.022Z","response_time":60,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-31T04:59:56.713Z","updated_at":"2025-10-28T22:48:45.869Z","avatar_url":"https://github.com/arosh.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Vaa3D-SIGEN\n\n## Requirements for Vaa3D Plugin\n\n* [CMake](https://cmake.org/) \u003e= 2.8\n* [Boost](http://www.boost.org/)\n* [Vaa3D/v3d_external](https://github.com/Vaa3D/v3d_external)\n\n## Requirements for Runner\n\n* [CMake](https://cmake.org/) \u003e= 2.8\n* [google-glog](https://github.com/google/glog)\n* [OpenCV](http://opencv.org/)\n* [Boost](http://www.boost.org/)\n\n## How to Build Plugin\n\n```\n$ cd vaa3d\n$ nano SIGEN.pro # edit `VAA3DPATH` variable\n$ qmake\n$ make\n```\n\n`libSIGEN.*` will be located in `SIGEN_ROOT/vaa3d/build`. Please put `libSIGEN.*` in `vaa3d/plugins/neuron_tracing/SIGEN` directory.\n\n## How to Build Standalone Runner\n\n```\n$ mkdir build\n$ cd build\n$ cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_MAIN=ON ..\n$ make\n```\n\nIf you run `cmake .` in project top directory, `CMakeFiles`, `CMakeCache.txt`, `cmake_install.cmake`, `Makefile` will be located in undesirable directories.\n\n## How to Test\n\n```\n$ mkdir build\n$ cd build\n$ cmake -DCMAKE_BUILD_TYPE=Debug -DBUILD_MAIN=ON ..\n$ make\n$ make test\n```\n\nIf you run `cmake .` in project top directory, `CMakeFiles`, `CMakeCache.txt`, `cmake_install.cmake`, `Makefile` will be located in undesirable directories.\n\n## Setting\n\n* Interpolation (VT, DT)\n* Clipping (level)\n* Smoothing (level)\n\n## License\n\nThis software is released under the MIT License.\n\nCopyright (c) 2016 Sho Iizuka\n\n## References\n\n* Yamasaki, T., Isokawa, T., Matsui, N., Ikeno, H. and Kanzaki, R.: Reconstruction and simulation for three-dimensional morphological structure of insect neurons, Neurocomputing, Vol.69, pp.1043-1047 (2006). \\[[link](http://dx.doi.org/10.1016/j.neucom.2005.12.042)\\]\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Farosh%2Fvaa3d-sigen","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Farosh%2Fvaa3d-sigen","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Farosh%2Fvaa3d-sigen/lists"}