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Kaplan Meier Graph\n\nKMPen is a visualization tool to create Kaplan Meier survival probability graph.\n\n### Features\n#### Clean:\n- No dependency on Bootstrap.\n- Create KM survival probability graph for each group.\n- Read fixed text datafiles and extract data based on them.\n- Read p value from text datafiles.\n- Start probability from 1.\n- Export graph as PNG, JPG, and PDF format.\n#### KIRC:\n- Separate dataset into groups.\n- Create KM survival probability graph for each group.\n- Read fixed text datafiles and extract data based on them.\n- The project can extract columns and rows.\n- Export graph as PNG, JPG, and PDF format.\n#### Basic:\n- Create Kaplan-Meier survival probability graph based on dataset mentioned in paper [Understanding survival analysis: Kaplan-Meier estimate](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059453/).\n- The project can create random dataset and generate Kaplan-Meier survival graph based on the dataset.\n- Download graph as PNG, JPG, and PDF format.\n- Responsive graph\n\n### Demo (Clean)\n\n- Graph with p_value\n  ![p_value](screenshots_clean/km_graph.png)\n\n### Demo (KIRC)\n\n- Graph with data\n  ![Full Page](screenshots/full.png)\n- Effect of A1BG expression level \u0026 race on KIRC patient survival dataset\n  ![kirc km graph race](screenshots/km_graph.png)\n- Effect of A1BG expression level \u0026 gender on KIRC patient survival dataset\n  ![kirc km graph race](screenshots/km_graph_2.png)\n\n### Demo (Basic)\n\n- Graph with data\n  ![Full Page](screenshots_basic_km_plots/full.png)\n- Data\n  ![data](screenshots_basic_km_plots/data.png)\n- Kaplan Meier Survival Probability Graph\n  ![basic km graph](screenshots_basic_km_plots/km_graph.png)\n\n\n### Library used\n- jQuery: Version 3.6.0.min\n- ChartJS: Version 3.6.2\n- Datatable: Version 1.11.3\n- jsPDF: Version 1.3.2\n- Bootstrap: Version 5.1.3\n- Bootstrap Icons: Version 1.5.0\n\n## ToDo\n- Add convert to SVG button. Tutorial can be found in [Canvas to SVG](https://editor.p5js.org/jeffThompson/sketches/9UBWBj32R).\n- Fix chart in small screen (mobile)\n\n## Support\n\nPlease [open an issue](https://github.com/arsho/kmpen/issues/new) for support.\n\n## Contributing\n\nPlease contribute using [Github Flow](https://guides.github.com/introduction/flow/). Create a branch, add commits, and [open a pull request](https://github.com/arsho/kids_math/compare/).\n\n### Git methods\n- Create new branch:\n    ```\n    git fetch origin\n    git checkout master\n    git reset --hard origin/master\n    git checkout -b BRANCH_NAME\n    ```    \n- To check local changes:\n    ```\n    git status -s\n    ```\n- Commit changes:\n    ```\n    git add --all\n    git commit -m \"Issue:Issue_Number message\"\n    git push origin BRANCH_NAME\n    ```    \n- To fetch from upstream repository:\n    ```\n    git fetch origin\n    ```\n- To reset local files to upstream repository `main` branch after fetching the changes:\n    ```\n    git reset --hard origin/main\n    ```\n\n### Resources\n- [Understanding survival analysis: Kaplan-Meier estimate](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059453/)\n- [A PRACTICAL GUIDE TO UNDERSTANDING KAPLAN-MEIER CURVES](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3932959/)\n- [Chartjs line chart documentation](https://www.chartjs.org/docs/3.6.2/charts/line.html)\n- [Chartjs graph export](https://www.chartjs.org/docs/3.6.2/developers/api.html#tobase64image-type-quality)\n- [JSPDF documentation](https://github.com/matb/jsPDF)\n- [Chartjs canvas background](https://www.chartjs.org/docs/3.6.2/configuration/canvas-background.html)\n- [Kaplan Meier graph example](https://canvasxpress.org/examples/kaplan-meier-1.html)\n- [Remove some points in line chart chartjs - Javascript Chart.js](http://www.java2s.com/example/javascript/chart.js/remove-some-points-in-line-chart-chartjs.html)\n- [Current demo](http://ualcan.path.uab.edu/cgi-bin/TCGA-survival1.pl?genenam=A1BG\u0026ctype=KIRC)","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Farsho%2Fkmpen","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Farsho%2Fkmpen","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Farsho%2Fkmpen/lists"}