{"id":36445366,"url":"https://github.com/askimed/nf-test","last_synced_at":"2026-01-15T02:05:39.308Z","repository":{"id":42040265,"uuid":"418533717","full_name":"askimed/nf-test","owner":"askimed","description":"Simple test framework for Nextflow pipelines","archived":false,"fork":false,"pushed_at":"2025-11-03T06:14:08.000Z","size":6197,"stargazers_count":174,"open_issues_count":113,"forks_count":36,"subscribers_count":8,"default_branch":"main","last_synced_at":"2026-01-11T23:53:08.061Z","etag":null,"topics":["nextflow","test-automation","testing","testing-tools"],"latest_commit_sha":null,"homepage":"https://www.nf-test.com","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/askimed.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2021-10-18T14:18:07.000Z","updated_at":"2026-01-08T09:44:16.000Z","dependencies_parsed_at":"2023-09-23T19:01:21.155Z","dependency_job_id":"a6039b2c-b7e7-40ec-8a71-16adb2d234c6","html_url":"https://github.com/askimed/nf-test","commit_stats":null,"previous_names":[],"tags_count":27,"template":false,"template_full_name":null,"purl":"pkg:github/askimed/nf-test","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/askimed%2Fnf-test","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/askimed%2Fnf-test/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/askimed%2Fnf-test/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/askimed%2Fnf-test/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/askimed","download_url":"https://codeload.github.com/askimed/nf-test/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/askimed%2Fnf-test/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28441031,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-15T00:55:22.719Z","status":"online","status_checked_at":"2026-01-15T02:00:08.019Z","response_time":62,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["nextflow","test-automation","testing","testing-tools"],"created_at":"2026-01-11T22:06:44.616Z","updated_at":"2026-01-15T02:05:39.302Z","avatar_url":"https://github.com/askimed.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"# :rocket: nf-test\n\n\u003e Simple test framework for Nextflow pipelines\nThe full documentation can be found [here](https://code.askimed.com/nf-test).\n\n## Installation\n\nnf-test has the same requirements as Nextflow and can be used on POSIX compatible systems like Linux or OS X. You can install nf-test using the following command:\n\n```bash\ncurl -fsSL https://get.nf-test.com | bash\n```\n\nIf you don't have curl installed, you could use wget:\n\n```bash\nwget -qO- https://get.nf-test.com | bash\n```\n\nIt will create the `nf-test` executable file in the current directory. Optionally, move the `nf-test` file to a directory accessible by your `$PATH` variable.\n\n### Conda\n\nTo install this package from Bioconda run the following command:\n\n```\nconda install -c bioconda nf-test\n```\n\n*Note: this recipe is not maintained by us.*\n\n### Compile from source\nTo compile nf-test from source you shall have maven installed. This will produce a `nf-test/target/nf-test.jar` file.\n```\ngit clone git@github.com:askimed/nf-test.git\ncd nf-test\nmvn install\n```\nTo use the newly compiled `nf-test.jar`, update the `nf-test` bash script that is on your PATH to point to the new `.jar` file.\nFirst locate it with `which nf-test`, and then modify `APP_HOME` and `APP_JAR` vars at the top:\n```\n#!/bin/bash\nAPP_HOME=\"/PATH/TO/nf-test/target/\"\nAPP_JAR=\"nf-test.jar\"\nAPP_UPDATE_URL=\"https://code.askimed.com/install/nf-test\"\n...\n```\n\n## Usage\n\n```\nnf-test test example/*.nf.test\n```\n\nThe full documentation can be found [here](https://code.askimed.com/nf-test).\n\n## Badge\n\nShow the world your Nextflow pipeline is using nf-test:\n\n[![nf-test](https://img.shields.io/badge/tested_with-nf--test-337ab7.svg)](https://github.com/askimed/nf-test)\n\n```\n[![nf-test](https://img.shields.io/badge/tested_with-nf--test-337ab7.svg)](https://github.com/askimed/nf-test)\n```\n\n## Citation\n\nIf you test your pipeline with nf-test, please cite:\n\nForer, L., \u0026 Schönherr, S. (2024). Improving the Reliability and Quality of Nextflow Pipelines with nf-test. *bioRxiv*. [https://doi.org/10.1101/2024.05.25.595877](https://doi.org/10.1101/2024.05.25.595877)\n\n## Contact\n\n- Lukas Forer [@lukfor](https://twitter.com/lukfor)\n- Sebastian Schönherr [@seppinho](https://twitter.com/seppinho)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Faskimed%2Fnf-test","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Faskimed%2Fnf-test","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Faskimed%2Fnf-test/lists"}