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reSPonsE Classification of Tumours (INSPECTumours)\n=================================================================================\n\n\u003c!-- badges: start --\u003e\n[![CRAN status](https://www.r-pkg.org/badges/version/INSPECTumours)](https://cran.r-project.org/package=INSPECTumours)\n[![R-CMD-check](https://github.com/AstraZeneca/INSPECTumours/workflows/R-CMD-check/badge.svg)](https://github.com/AstraZeneca/INSPECTumours/actions)\n![Maturity level-0](https://img.shields.io/badge/Maturity%20Level-ML--0-red)\n\u003c!-- badges: end --\u003e\n\nThe package was built under R version 4.1.1\n\n# Project information \n\nThis is a shiny tool to classify and analyse pre-clinical tumour data automatically. \n\n# Software requirements\nDepends: \n    R (\u003e= 3.5.0)\nImports: \n    brms,\n    dplyr,\n    DT,\n    ggeffects,\n    ggplot2,\n    knitr,\n    lme4,\n    modelr,\n    pander,\n    plotly,\n    purrr,\n    readxl,\n    rlang,\n    rmarkdown,\n    shiny,\n    shinyalert,\n    shinyFeedback,\n    shinyjs,\n    shinytoastr,\n    shinyvalidate,\n    tidybayes,\n    tippy,\n    tidyr,\n    vroom,\n    waiter\n\n# How to use \n\nIn order to use this package, please follow the instruction below. \n\n## Install from CRAN\n\n```r\ninstall.packages(\"INSPECTumours\")\n```\n\n\n## R 4.2 on Windows\nThe Rstan is a dependancy of the brms package that is used to build models in the app.\n\n[The current CRAN Rstan (version 2.21.5) does not work with R 4.2 on Windows.](https://blog.mc-stan.org/2022/04/26/stan-r-4-2-on-windows/)\n\nYou need to install rstan and StanHeaders packages from the Stan R package repository.\n```r\n# if you have installed packages from CRAN\nremove.packages(c(\"rstan\", \"StanHeaders\"))\n\ninstall.packages(\"rstan\", repos = c(\"https://mc-stan.org/r-packages/\", getOption(\"repos\")))\n```\n\n## Install from github (development version)\n\n```r\nif (!requireNamespace(\"devtools\", quietly = TRUE))\n\n    install.packages(\"devtools\")\n\ndevtools::install_github(\"AstraZeneca/INSPECTumours\")\n\n```\n\n## Run App\n\n```r\nlibrary(INSPECTumours)\n\nrun_app()\n```\n\n# Development\n## Work with a source code\n\n```r\n# re-load all code after changes\ndevtools::load_all()\n\nrun_app()\n```\n\n## Run Tests\n\n```r\ndevtools::test()\n```\n## Run github check for package \n\n```r\nusethis::use_github_action_check_standard()\n```\n\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fastrazeneca%2Finspectumours","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fastrazeneca%2Finspectumours","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fastrazeneca%2Finspectumours/lists"}