{"id":19917192,"url":"https://github.com/athos/igv-client","last_synced_at":"2026-03-01T13:03:24.904Z","repository":{"id":65350840,"uuid":"166357943","full_name":"athos/igv-client","owner":"athos","description":"Clojure implementation of IGV client to control IGV via its Port Commands","archived":false,"fork":false,"pushed_at":"2023-11-20T21:15:22.000Z","size":17,"stargazers_count":4,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-11-29T14:16:50.697Z","etag":null,"topics":["clojure","igv"],"latest_commit_sha":null,"homepage":null,"language":"Clojure","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"epl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/athos.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-01-18T06:48:35.000Z","updated_at":"2023-11-20T21:15:26.000Z","dependencies_parsed_at":"2025-05-03T06:30:49.691Z","dependency_job_id":"ddbe072b-eae0-4bb3-b8fd-a6f6e80cd7ef","html_url":"https://github.com/athos/igv-client","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/athos/igv-client","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/athos%2Figv-client","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/athos%2Figv-client/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/athos%2Figv-client/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/athos%2Figv-client/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/athos","download_url":"https://codeload.github.com/athos/igv-client/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/athos%2Figv-client/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29969700,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-01T12:56:10.327Z","status":"ssl_error","status_checked_at":"2026-03-01T12:55:24.744Z","response_time":124,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["clojure","igv"],"created_at":"2024-11-12T21:49:06.370Z","updated_at":"2026-03-01T13:03:24.885Z","avatar_url":"https://github.com/athos.png","language":"Clojure","funding_links":[],"categories":[],"sub_categories":[],"readme":"# igv-client\n[![Clojars Project](https://img.shields.io/clojars/v/igv-client.svg)](https://clojars.org/igv-client)\n[![CircleCI](https://circleci.com/gh/athos/igv-client.svg?style=shield)](https://circleci.com/gh/athos/igv-client)\n\nClojure implementation of IGV client to control [IGV](http://software.broadinstitute.org/software/igv/) via its [Port Commands](https://igv.org/doc/desktop/#UserGuide/advanced/external_control/#port-commands)\n\n## Installation\n\nAdd the following to your `:dependencies`:\n\n[![Clojars Project](https://clojars.org/igv-client/latest-version.svg)](https://clojars.org/igv-client)\n\n## Usage\n\n```clojure\n(require '[igv-client.core :as igv])\n\n(def client (igv/connect \"127.0.0.1\" 60151))\n(igv/set-snapshot-dir! client \"/path/to/snapshot/dir\")\n\n(igv/reset client)\n(igv/load-file client \"/path/to/your/input/file\")\n(igv/goto client \"chr1\" 123456)\n(igv/collapse client)\n(igv/snapshot client)\n(.close client)\n\n;; or you can also write the same thing with the threading macro:\n\n(-\u003e client\n    igv/reset\n    (igv/load-file \"/path/to/your/input/file\")\n    (igv/goto \"chr1\" 123456)\n    igv/collapse\n    igv/snapshot\n    .close)\n```\n\n## Available Commands\n\nFollowing is the list of commands available:\n\n| Command Name          | Function Signature                      |\n|-----------------------|-----------------------------------------|\n| `version`             | `(version \u003cclient\u003e)`                    |\n| `new`/`reset`/`clear` | `(reset \u003cclient\u003e)`                      |\n| `load`/`loadfile`     | `(load-file \u003cclient\u003e \u003cpath\u003e)`           |\n| `remove`              | `(remove \u003cclient\u003e \u003ctrack\u003e)`             |\n| `genome`              | `(genome \u003cclient\u003e \u003cgenome\u003e)`            |\n| `goto`                | `(goto \u003cclient\u003e \u003clocus\u003e)`               |\n|                       | `(goto \u003cclient\u003e \u003cchr\u003e \u003cpos\u003e)`           |\n| `gototrack`           | `(goto-track \u003cclient\u003e \u003ctrack\u003e)`         |\n| `setsleepinterval`    | `(set-sleep-interval! \u003cclient\u003e \u003cmsec\u003e)` |\n| `snapshotdirectory`   | `(set-snapshot-dir! \u003cclient\u003e \u003cdir\u003e)`    |\n| `snapshot`            | `(snapshot \u003cclient\u003e)`                   |\n| `zoomin`              | `(zoom-in \u003cclient\u003e)`                    |\n| `zoomout`             | `(zoom-out \u003cclient\u003e)`                   |\n| `collapse`            | `(collapse \u003cclient\u003e [\u003ctrack\u003e])`         |\n| `expand`              | `(expand \u003cclient\u003e [\u003ctrack\u003e])`           |\n| `squish`              | `(squish \u003cclient\u003e [\u003ctrack\u003e])`           |\n| `tofront`             | `(bring-to-front! \u003cclient\u003e)`            |\n\n## License\n\nCopyright © 2019 Shogo Ohta\n\nThis program and the accompanying materials are made available under the\nterms of the Eclipse Public License 2.0 which is available at\nhttp://www.eclipse.org/legal/epl-2.0.\n\nThis Source Code may also be made available under the following Secondary\nLicenses when the conditions for such availability set forth in the Eclipse\nPublic License, v. 2.0 are satisfied: GNU General Public License as published by\nthe Free Software Foundation, either version 2 of the License, or (at your\noption) any later version, with the GNU Classpath Exception which is available\nat https://www.gnu.org/software/classpath/license.html.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fathos%2Figv-client","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fathos%2Figv-client","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fathos%2Figv-client/lists"}