{"id":21106058,"url":"https://github.com/ax3man/phylopath","last_synced_at":"2025-08-03T04:03:17.090Z","repository":{"id":56934553,"uuid":"65209538","full_name":"Ax3man/phylopath","owner":"Ax3man","description":"Perform phylogenetic path analysis in R.","archived":false,"fork":false,"pushed_at":"2024-09-19T16:48:51.000Z","size":18517,"stargazers_count":13,"open_issues_count":2,"forks_count":3,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-04-21T20:07:25.226Z","etag":null,"topics":["analysis","comparative-methods","path","phylogenetics","r","rstats"],"latest_commit_sha":null,"homepage":"https://ax3man.github.io/phylopath/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Ax3man.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-08-08T14:09:18.000Z","updated_at":"2025-01-19T03:16:12.000Z","dependencies_parsed_at":"2024-06-13T18:46:21.853Z","dependency_job_id":null,"html_url":"https://github.com/Ax3man/phylopath","commit_stats":{"total_commits":272,"total_committers":4,"mean_commits":68.0,"dds":0.4227941176470589,"last_synced_commit":"ca896c30c7c637c8744040a8da0540029a5f483b"},"previous_names":[],"tags_count":5,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Ax3man%2Fphylopath","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Ax3man%2Fphylopath/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Ax3man%2Fphylopath/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Ax3man%2Fphylopath/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Ax3man","download_url":"https://codeload.github.com/Ax3man/phylopath/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254688895,"owners_count":22112514,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["analysis","comparative-methods","path","phylogenetics","r","rstats"],"created_at":"2024-11-20T00:13:07.879Z","updated_at":"2025-05-17T09:40:29.781Z","avatar_url":"https://github.com/Ax3man.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# phylopath\n\n[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/phylopath)](https://cran.r-project.org/package=phylopath) [![Cran downloads](http://cranlogs.r-pkg.org/badges/grand-total/phylopath)](http://cran.rstudio.com/web/packages/phylopath/index.html) [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)\n\nThis package implements phylogenetic path analysis in R.\n\nInstall the package using:\n\n```{r}\ninstall.packages(\"phylopath\")\n```\nYou may need to install the downstream dependency `graph` from Bioconductor:\n\n```{r}\nif (!require(\"BiocManager\", quietly = TRUE)) install.packages(\"BiocManager\")\nBiocManager::install(\"graph\")\n```\n\nOr if you'd like to install the development version (here on github), use:\n\n```{r}\nremotes::install_github(\"Ax3man/phylopath\")\n```\n\nIt's easiest to start on the [website](https://ax3man.github.io/phylopath) and first read the introduction [here](https://ax3man.github.io/phylopath/articles/intro_to_phylopath.html), or read the [paper in PeerJ](https://doi.org/10.7717/peerj.4718).\n\nIf you find any problems, or if you have suggestions for improvements, please file those under [issues](/issue). PRs welcome.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fax3man%2Fphylopath","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fax3man%2Fphylopath","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fax3man%2Fphylopath/lists"}