{"id":18256470,"url":"https://github.com/baderlab/baderlab_static_webservers","last_synced_at":"2026-01-20T07:33:38.191Z","repository":{"id":177008291,"uuid":"655801557","full_name":"BaderLab/Baderlab_static_webservers","owner":"BaderLab","description":"repo with dockers for each of the static baderlab servers","archived":false,"fork":false,"pushed_at":"2023-10-27T19:42:00.000Z","size":35,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-04-08T22:32:09.381Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Dockerfile","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BaderLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-06-19T16:15:25.000Z","updated_at":"2023-08-25T14:55:27.000Z","dependencies_parsed_at":"2023-07-11T21:46:12.300Z","dependency_job_id":"13f8f151-117c-486c-803b-280b539c8532","html_url":"https://github.com/BaderLab/Baderlab_static_webservers","commit_stats":null,"previous_names":["baderlab/baderlab_static_webservers"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/BaderLab/Baderlab_static_webservers","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FBaderlab_static_webservers","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FBaderlab_static_webservers/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FBaderlab_static_webservers/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FBaderlab_static_webservers/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BaderLab","download_url":"https://codeload.github.com/BaderLab/Baderlab_static_webservers/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FBaderlab_static_webservers/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28598165,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-20T02:08:49.799Z","status":"ssl_error","status_checked_at":"2026-01-20T02:08:44.148Z","response_time":117,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-05T10:22:05.017Z","updated_at":"2026-01-20T07:33:38.175Z","avatar_url":"https://github.com/BaderLab.png","language":"Dockerfile","funding_links":[],"categories":[],"sub_categories":[],"readme":"There are 6 static BaderLab static websites.  Each site is in a stand alone virtual machine running old software.  This repo is the documentation on the new versions of these old static websites.\n\nThe websites are:\n1. POW (pow.baderlab.org) - 192.168.81.143\n2. PRM-DB (prm-db.org) - 192.168.81.192\n3. pathguide (pathguide.org) - 192.168.81.175\n4. DV-IMPACT (dvimpact.baderlab.org / canvd.baderlab.org) - 192.168.81.189\n5. MIMP (mimp.baderlab.org) - 192.168.81.141\n6. cytoscape wiki (wikiold.cytoscape.org) - 192.168.81.131\n\nEach site has been converted over to a docker and is now running newer versions of software.  All servers are running on ubuntu OS and using APT for package managment.\n\nThe corresponding dockers are:\n1. POW - [iweinberger/pow](https://hub.docker.com/repository/docker/iweinberger/pow/general)\n2. PRM-DB - [iweinberger/prm-db](https://hub.docker.com/repository/docker/iweinberger/prm-db/general)\n3. pathguide - [iweinberger/pathguide](https://hub.docker.com/repository/docker/iweinberger/pathguide/general)\n4. DV-IMPACT - [iweinberger/dv-impact](https://hub.docker.com/repository/docker/iweinberger/dv-impact/general)\n5. MIMP - [iweinberger/mimp](https://hub.docker.com/repository/docker/iweinberger/mimp/general)\n6. cytoscape wiki - [iweinberger/cytoscape-wiki-old](https://hub.docker.com/repository/docker/iweinberger/cytoscape-wiki-old/general)\n\nEach docker can be downloaded and run through Docker user the command `docker run -ditp 80:80 **container_name**`.\nEach site has it's own Docker image however all 6 sites have also been combined into one docker image which can be found at iweinberger/all-baderlab-sites(https://hub.docker.com/repository/docker/iweinberger/all-baderlab-sites/general)\n\nPOW:\n  POW is a website that allows users to predict PDZ domain-peptide interactions for human, mouse, worm and fly PDZ domains.\n  Software:\n  - python2.7\n  - svm\n  - apache2\n  - apache2 cgi\n\nPRM-BD:\n  PRM-DB allows users to search for a domain or protein by name, all domains from a given species, all members of a domain family, or search for combinations of these criteria.\n  Software:\n  - apache2\n  - mySQL\n  - PHP\n  - php-mysql\n  - libapache2-mod-php\n\nDV-IMPACT:\n  DV-IMPACT is a resource for the disease variants impact assessment on domain-peptide PPI networks\n  Software:\n  - apache2\n  - mySQL\n  - PHP\n  - php-mysql\n  - libapache2-mod-php\n\nPathguide:\n  Pathguide is a database that contains information about 702 biological pathway related resources and molecular interaction related resources\n  - apache2\n  - mySQL\n  - PHP\n  - php-mysql\n  - libapache2-mod-php\n\nMIMP:\n  MIMP characterizes genetic variants such as cancer mutations that specifically alter kinase-binding sites in proteins.\n  Software:\n  - Nginx\n  - Java 8\n    - openjdk-8-jre\n    - openjdk-8-jdk\n  - Play 2.2.1\n  - R 3.6.3\n  - gcc 9.4.0\n  - Make\n  - gfortran\n  - Flex\n  - Autogen\n  - gcc-multilib\n  - Libcurl4-openssl-dev\n\nCytoscape wiki (old):\n  Old wiki for cytoscape.\n  - apache2\n  - python2\n  - MoinMoin\n  - libapache2-mod-wsgi-py3\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbaderlab%2Fbaderlab_static_webservers","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbaderlab%2Fbaderlab_static_webservers","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbaderlab%2Fbaderlab_static_webservers/lists"}