{"id":18256466,"url":"https://github.com/baderlab/cytoscape-workshop-docker","last_synced_at":"2025-07-25T23:17:02.723Z","repository":{"id":146738305,"uuid":"58745280","full_name":"BaderLab/Cytoscape-workshop-docker","owner":"BaderLab","description":null,"archived":false,"fork":false,"pushed_at":"2016-05-15T15:50:36.000Z","size":43592,"stargazers_count":2,"open_issues_count":0,"forks_count":1,"subscribers_count":8,"default_branch":"master","last_synced_at":"2025-04-08T22:32:07.688Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BaderLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-05-13T14:03:08.000Z","updated_at":"2018-05-13T07:28:31.000Z","dependencies_parsed_at":null,"dependency_job_id":"4018d3d5-3f19-4791-a176-2b7ea36b7964","html_url":"https://github.com/BaderLab/Cytoscape-workshop-docker","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/BaderLab/Cytoscape-workshop-docker","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FCytoscape-workshop-docker","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FCytoscape-workshop-docker/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FCytoscape-workshop-docker/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FCytoscape-workshop-docker/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BaderLab","download_url":"https://codeload.github.com/BaderLab/Cytoscape-workshop-docker/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BaderLab%2FCytoscape-workshop-docker/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":267081709,"owners_count":24032957,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-07-25T02:00:09.625Z","response_time":70,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-05T10:22:04.087Z","updated_at":"2025-07-25T23:17:02.648Z","avatar_url":"https://github.com/BaderLab.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Enrichment Map Tutorial Docker\n\nThis docker build creates an image that contains all programs and libraries required to run the basic EM analysis described in the Enrichment Map Protocol.\n\n### Build steps\n1. Install Docker. For OS X (with VMWare installed), you can use [Homebrew](http://brew.sh/):\n\n        $ /usr/bin/ruby -e \"$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)\"\n        $ brew install docker docker-compose docker-machine\n   \n1. For Mac osx follow the instruction [from docker](https://docs.docker.com/engine/installation/mac/)\n\n1. For windows follow the instructions [from docker](https://docs.docker.com/windows/step_one/)\n\n1. Create a Docker machine: \n\n        $ docker-machine create --driver vmwarefusion\n1. Build Enrichment Map Tutorial Docker.Run the below command from the directory that contains your Dockerfile. This should take several minutes: \n\n        $ docker build -t emtutorial/emtutorial .\n\n### Running\n1. To run the above docker image you need modify the below to contain the ip of the computer you are working on.  Change 192.168.0.10 to your IP.\n\n        $ docker run --rm -it -p 8888:8888  --add-host=\"localhost:192.168.0.10\" -v \"$(pwd)/notebooks:/home/jovyan/work\" emtutorial/emtutorial\n\n1. Get IP of docker image\n\n        $ docker-machine ip\n\n1. You can now access the Enrichment Map Tutorial Docker from you browser: http://ip-of-docker-machine:8888 \n\t\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbaderlab%2Fcytoscape-workshop-docker","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbaderlab%2Fcytoscape-workshop-docker","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbaderlab%2Fcytoscape-workshop-docker/lists"}