{"id":47839966,"url":"https://github.com/barricklab/breseq-gui","last_synced_at":"2026-04-03T20:36:51.837Z","repository":{"id":37192096,"uuid":"262670685","full_name":"barricklab/breseq-gui","owner":"barricklab","description":"Electron GUI for breseq","archived":false,"fork":false,"pushed_at":"2023-09-06T11:14:02.000Z","size":7853,"stargazers_count":4,"open_issues_count":7,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-09-09T16:02:58.481Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/barricklab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-05-09T22:32:39.000Z","updated_at":"2023-09-06T11:14:09.000Z","dependencies_parsed_at":"2023-01-26T16:16:46.077Z","dependency_job_id":null,"html_url":"https://github.com/barricklab/breseq-gui","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/barricklab/breseq-gui","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fbreseq-gui","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fbreseq-gui/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fbreseq-gui/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fbreseq-gui/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/barricklab","download_url":"https://codeload.github.com/barricklab/breseq-gui/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fbreseq-gui/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31375772,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-03T17:53:18.093Z","status":"ssl_error","status_checked_at":"2026-04-03T17:53:17.617Z","response_time":107,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-04-03T20:36:51.113Z","updated_at":"2026-04-03T20:36:51.809Z","avatar_url":"https://github.com/barricklab.png","language":"JavaScript","funding_links":[],"categories":[],"sub_categories":[],"readme":"# breseq-gui\n\nThis package provides a MacOS X graphical user interface for running the [_breseq_](https://github.com/barricklab/breseq) pipeline for predicting mutations in microbial genomes.\n\nCurrently, you must [install _breseq_](https://barricklab.org/twiki/pub/Lab/ToolsBacterialGenomeResequencing/documentation/installation.html) on your own and make sure that it and its prerequisites (R and bowtie2) are all in your `$PATH` to use `breseq-gui`. \n\nThe easiest way to do this if you are not familiar with the command line is to use these directions in the Terminal to [install BioConda](https://bioconda.github.io/) and then [install the _breseq_ recipe](http://bioconda.github.io/recipes/breseq/README.html). This will automatically install and set up everything that you need.\n\nIf you get errors related to R when running _breseq_ installed through conda, run this additional command to fix them:\n```\nconda update -c rdonnellyr -c main --all\n```\n\n## Developer Quick Start\n\n`breseq-gui` is an [Electron Forge](https://www.electronforge.io/) project. For development, you will need to [install npm](https://www.npmjs.com/get-np) and then [install Electron](https://www.electronjs.org/docs/tutorial/installation).\n\nYou should now be able to run this command from the main source directory to launch the repository version of **breseq-gui**:\n\n```\nnpm start\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbarricklab%2Fbreseq-gui","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbarricklab%2Fbreseq-gui","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbarricklab%2Fbreseq-gui/lists"}