{"id":51629461,"url":"https://github.com/barricklab/conda","last_synced_at":"2026-07-13T05:32:32.720Z","repository":{"id":367192121,"uuid":"1279670741","full_name":"barricklab/conda","owner":"barricklab","description":"Pre-release conda channel for breseq, auto-built from barricklab/breseq master","archived":false,"fork":false,"pushed_at":"2026-07-09T18:33:58.000Z","size":192707,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2026-07-09T20:08:35.261Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Shell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/barricklab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2026-06-24T23:03:28.000Z","updated_at":"2026-07-09T18:34:28.000Z","dependencies_parsed_at":null,"dependency_job_id":null,"html_url":"https://github.com/barricklab/conda","commit_stats":null,"previous_names":["barricklab/conda"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/barricklab/conda","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fconda","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fconda/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fconda/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fconda/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/barricklab","download_url":"https://codeload.github.com/barricklab/conda/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2Fconda/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":35412244,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-07-13T02:00:06.543Z","response_time":119,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-07-13T05:32:32.032Z","updated_at":"2026-07-13T05:32:32.712Z","avatar_url":"https://github.com/barricklab.png","language":"Shell","funding_links":[],"categories":[],"sub_categories":[],"readme":"# conda\n\nA custom conda channel publishing automated pre-release builds of\n[breseq](https://github.com/barricklab/breseq), tracking its `master` branch.\n\nChannel URL (once published): `https://barricklab.github.io/conda/`\n\n```\nconda install -c https://barricklab.github.io/conda/ breseq-prerelease\n```\n\nThis is **not** the stable `breseq` package (that's distributed via\n[bioconda](https://bioconda.github.io/recipes/breseq/README.html)). Packages\nhere are built straight from breseq's `master` branch and may be broken or\nunstable; use them to test in-development changes, not for production\nanalysis.\n\n## How it works\n\n- `recipe/breseq-prerelease/` is a conda-build recipe that builds breseq from\n  a git checkout (`source.git_url`) rather than a release tarball, and derives\n  a PEP440 dev version from `git describe` (e.g. `0.40.1.dev42+g3a91c4`).\n- `.github/workflows/build-and-publish.yml` runs daily at 7:13 UTC (~3:13am\n  US Eastern) and can also be triggered manually (`workflow_dispatch`): it\n  checks whether breseq has a new commit since the last publish\n  (`scripts/check_new_commit.sh`), and if so builds packages for linux-64,\n  linux-aarch64, osx-arm64, and osx-64, and publishes them into the channel\n  (`scripts/publish_channel.sh` + `conda index`) hosted on the `gh-pages`\n  branch.\n- `state/last-published-commit.json` (on `main`) records the last breseq\n  commit that was successfully published, so re-running the workflow with no\n  new upstream commits is a cheap no-op.\n\n## Triggering a build\n\nRuns automatically once a day. To trigger manually: from the GitHub UI,\nActions → \"Build and publish breseq-prerelease\" → Run workflow. Or via the\nCLI:\n\n```\ngh workflow run build-and-publish.yml\ngh run watch\n```\n\nPreviously published package versions are never deleted — each run adds new\npackage files alongside existing ones and re-indexes the channel.\n\n## Testing an install\n\n`test-environment.yml` defines a throwaway environment pulling\n`breseq-prerelease` from this channel:\n\n```\nconda env create -f test-environment.yml\nconda activate breseq-prerelease-test\nbreseq --help\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbarricklab%2Fconda","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbarricklab%2Fconda","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbarricklab%2Fconda/lists"}