{"id":47839981,"url":"https://github.com/barricklab/fitnessr","last_synced_at":"2026-04-03T20:36:52.704Z","repository":{"id":92283003,"uuid":"576115780","full_name":"barricklab/fitnessR","owner":"barricklab","description":"R package for calculating relative fitness from co-culture competition assays","archived":false,"fork":false,"pushed_at":"2023-04-21T21:10:10.000Z","size":1330,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-09-09T13:54:11.470Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/barricklab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-12-09T03:26:54.000Z","updated_at":"2023-01-20T20:07:01.000Z","dependencies_parsed_at":"2023-03-23T08:48:52.919Z","dependency_job_id":null,"html_url":"https://github.com/barricklab/fitnessR","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/barricklab/fitnessR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2FfitnessR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2FfitnessR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2FfitnessR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2FfitnessR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/barricklab","download_url":"https://codeload.github.com/barricklab/fitnessR/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/barricklab%2FfitnessR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31375772,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-03T17:53:18.093Z","status":"ssl_error","status_checked_at":"2026-04-03T17:53:17.617Z","response_time":107,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-04-03T20:36:51.904Z","updated_at":"2026-04-03T20:36:52.672Z","avatar_url":"https://github.com/barricklab.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"# fitnessR\nAn R package for calculating relative fitness from co-culture competition assay data.\n\n\n## Installation\n\n### From GitHub\n\nTo install the current version of this package directly from GitHub, run this command in R:\n```R\ninstall.packages(\"devtools\")\ndevtools::install_github(\"barricklab/fitnessR\")\n```\n\n### From a Source Package\n\nTo install a version of this package from a source release downloaded from GitHub, run this \ncommand in R with your current working directory as the main directory of the uncompressed source release:\n\n```R\ninstall.packages(\"devtools\")\ndevtools::install()\n```\n\n## Quick Start\n\nDownload [competition_template.csv](https://raw.githubusercontent.com/barricklab/fitnessR/main/data-raw/competition_template.csv). (Right click this link and choose \"Save Link As...\") \n\nOpen the CSV file in a spreadsheet or text editor. Fill it in as directed by the comments in the file.\n\nCalculate relative fitness by running these commands in R:\n```R\nlibrary(fitnessR)\ncompetition_data = read.csv(\"competition_template.csv\")\nprocessed_competition_data = calculate_fitness(competition_data)\nwrite.csv(processed_competition_data, \"competition_template.csv\")\n```\n\n## More Information\n\nSee the [Introduction to fitnessR Vignette](https://htmlpreview.github.io/?https://github.com/barricklab/fitnessR/blob/main/vignettes/introduction.html) for more detailed examples that include calculating confidence intervals on relative fitness estimates and plotting competition data.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbarricklab%2Ffitnessr","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbarricklab%2Ffitnessr","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbarricklab%2Ffitnessr/lists"}