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It manages a workflow that combines existing packages and custom scripts to automate and unite several analyses into a single, easy-to-use pipeline. For specified pairs of bacterial genomes, it can:\n\n- Compute size difference between genomes\n- Predict the location of insertion sequences\n- Predict structural mutations (inversions, deletions, translocations, duplications)\n- Generate intuitive synteny plots to visualise structural variation\n- Analyse the effect of structural mutations on the balance of the two replichores\n- Predict the putative mechanism of inversions and deletions\n- Annotate the genes contained in the mutated regions\n\nPlease refer to the [official documentation](https://barricklab.github.io/seabreeze) for information on installation and usage.\n\nIf you use _seabreeze_, please cite \n\n\u003e Zibbu et al., (2025). seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies. Journal of Open Source Software, 10(111), 8065, https://doi.org/10.21105/joss.08065\n \n_seabreeze_ was developed at the [Barrick Lab](https://barricklab.org/twiki/bin/view/Lab) at the University of Texas at Austin. \n\nHave a question, issue to report, feature to request or code to contribute? Please see the [contributions](https://github.com/barricklab/seabreeze/blob/main/contributing.md).\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbarricklab%2Fseabreeze","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbarricklab%2Fseabreeze","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbarricklab%2Fseabreeze/lists"}