{"id":34675756,"url":"https://github.com/bartoszbartmanski/singularitycarnival","last_synced_at":"2026-05-26T15:38:16.873Z","repository":{"id":216227519,"uuid":"393926185","full_name":"BartoszBartmanski/SingularityCARNIVAL","owner":"BartoszBartmanski","description":"Repository for CARNIVAL singularity images based on Ubuntu 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library:\n```\nsingularity pull library://bartosz_bartmanski/default/carnival:\u003cversion\u003e\n```\nFor example:\n```\nsingularity pull library://bartosz_bartmanski/default/carnival:2.2.0\n```\n\n## Usage\n\nTo run the example script that uses lpSolve contained in `/example/` directory\nwithin the container, execute the following: \n```\n./carnival_2.2.0.sif\n```\nwhich will produce `example_output.Rds` amongst other intermediate files.\n\nTo use [CPLEX](https://www.ibm.com/analytics/cplex-optimizer) ILP solver\n```\nsingularity exec -B \u003ccplex_dir\u003e:\u003ccplex_dir\u003e,./:/data/ carnival_2.2.0.sif /example/other_solvers.R cplex \u003ccplex_dir\u003e/cplex /data/cplex_example.Rds\n```\nwhere `\u003ccplex_dir\u003e` is the cplex installation path e.g.\n`/opt/ibm/ILOG/CPLEX_Studio201/cplex/bin/x86-64_linux/`.\n\nTo use [Gurobi](https://www.gurobi.com/) ILP solver:\n```\nsingularity exec -B \u003cgurobi_dir\u003e:\u003cgurobi_dir\u003e,./:/data/ --env \"LD_LIBRARY_PATH=\u003cgurobi_dir\u003e/linux64/lib\" carnival_2.2.0.sif /example/other_solvers.R gurobi \u003cgurobi_dir\u003e/linux64/bin/gurobi_cl /data/gurobi_example.Rds\n```\nwhere `\u003cgurobi_dir\u003e` is the gurobi installation path e.g.\n`/opt/gurobi911/`\n\n\n## Build\n\nTo create a new image:\n```\nsudo singularity build carnival_\u003cversion\u003e.sif carnival.def\n```\nFor example:\n```\nsudo singularity build carnival_2.2.0.sif carnival.def\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbartoszbartmanski%2Fsingularitycarnival","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbartoszbartmanski%2Fsingularitycarnival","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbartoszbartmanski%2Fsingularitycarnival/lists"}