{"id":23450767,"url":"https://github.com/basedrhys/non-roi-masking","last_synced_at":"2025-04-10T09:59:21.211Z","repository":{"id":129516619,"uuid":"430026892","full_name":"basedrhys/non-roi-masking","owner":"basedrhys","description":"Evaluation of non-ROI masking to improve OOD generalization in chest x-ray disease classification","archived":false,"fork":false,"pushed_at":"2022-09-30T19:46:36.000Z","size":11182,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-02-15T19:48:42.572Z","etag":null,"topics":["chest-xrays","classification","medical-data","medical-imaging","ood-generalization"],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/basedrhys.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-11-20T06:25:34.000Z","updated_at":"2022-09-30T19:47:52.000Z","dependencies_parsed_at":"2023-04-20T22:54:33.499Z","dependency_job_id":null,"html_url":"https://github.com/basedrhys/non-roi-masking","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/basedrhys%2Fnon-roi-masking","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/basedrhys%2Fnon-roi-masking/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/basedrhys%2Fnon-roi-masking/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/basedrhys%2Fnon-roi-masking/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/basedrhys","download_url":"https://codeload.github.com/basedrhys/non-roi-masking/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248198865,"owners_count":21063626,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["chest-xrays","classification","medical-data","medical-imaging","ood-generalization"],"created_at":"2024-12-24T00:15:02.768Z","updated_at":"2025-04-10T09:59:21.191Z","avatar_url":"https://github.com/basedrhys.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# An Emperical Evaluation of Reducing Spurious Signals in Chest X-Rays via Non-ROI Masking\n\n[Weights and Biases Project](https://wandb.ai/basedrhys/ml4h)\n\n[Full Report](https://drive.google.com/file/d/1XB_jxtC2HqRp0ic8NvW7ChnIDJYAwKkv/view?usp=sharing)\n\n![Graph](graph.png)\n\n### Contents\n\n* `0-seg_train.ipynb` - Train the lung segmentation model\n* `1-seg_apply.py` - Create masks for a classification dataset via the segmentation model\n* `2-smooth_masks.py` - Postprocess the predicted lung masks to smooth them out\n* `3-create_chexpert.ipynb` - Create the binary classification version of CheXpert\n* `3-create_datasets.py` - Apply the smoothed masks and create train/val/test splits of classification dataset\n* `4-clf_train.ipynb` - Train the downstream classification model\n* `4-clf_train.py` - Train the downstream classification model\n* `5-eval.py` - Evaluate the trained classification models\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbasedrhys%2Fnon-roi-masking","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbasedrhys%2Fnon-roi-masking","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbasedrhys%2Fnon-roi-masking/lists"}