{"id":15384669,"url":"https://github.com/bblodfon/survmob","last_synced_at":"2025-10-27T20:30:31.499Z","repository":{"id":90675324,"uuid":"586121165","full_name":"bblodfon/survmob","owner":"bblodfon","description":"An R package for benchmarking survival ML models on multi-omics data","archived":false,"fork":false,"pushed_at":"2023-07-06T08:10:41.000Z","size":167,"stargazers_count":4,"open_issues_count":7,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2024-12-20T01:44:16.671Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bblodfon.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-01-07T02:25:51.000Z","updated_at":"2024-12-03T09:08:22.000Z","dependencies_parsed_at":"2024-01-10T15:03:00.238Z","dependency_job_id":null,"html_url":"https://github.com/bblodfon/survmob","commit_stats":{"total_commits":158,"total_committers":1,"mean_commits":158.0,"dds":0.0,"last_synced_commit":"4581d8a13e6bb24679dc69f1337368d618242ab9"},"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bblodfon%2Fsurvmob","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bblodfon%2Fsurvmob/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bblodfon%2Fsurvmob/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bblodfon%2Fsurvmob/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bblodfon","download_url":"https://codeload.github.com/bblodfon/survmob/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":238550155,"owners_count":19490841,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-01T14:43:01.612Z","updated_at":"2025-10-27T20:30:31.192Z","avatar_url":"https://github.com/bblodfon.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# survmob\n\n\u003c!-- badges: start --\u003e\n\n\u003c!-- badges: end --\u003e\n\n`survmob` is an R library that makes it easier to benchmark survival models across multiomics datasets.\nIt builds upon [mlr3proba](https://github.com/mlr-org/mlr3proba/) and other packages from the [mlr3](https://github.com/mlr-org/) ML ecosystem using [R6](https://github.com/r-lib/R6/) classes.\n\nKey classes and functions implemented:\n- Preprocessing - [link](https://github.com/bblodfon/survmob/blob/main/R/preprocess.R)\n- Survival learners and hyperparameter spaces class - [link](https://github.com/bblodfon/survmob/blob/main/R/SurvLPS.R)\n- Survival measures - [link](https://github.com/bblodfon/survmob/blob/main/R/measures.R)\n- Ensemble Feature Selection (eFS) class (uses Random Survival Forest learners and RFE algorithm for finding best feature subsets) - [link](https://github.com/bblodfon/survmob/blob/main/R/eFS.R)\n- Multi-omics benchmarking - [link](https://github.com/bblodfon/survmob/blob/main/R/MOBenchmark.R)\n\n## Installation\n\nInstall the latest development version of `survmob` using:\n```r\nremotes::install_github('bblodfon/survmob')\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbblodfon%2Fsurvmob","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbblodfon%2Fsurvmob","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbblodfon%2Fsurvmob/lists"}