{"id":22504937,"url":"https://github.com/bcbi/awesome-pubmed-webapps","last_synced_at":"2026-01-06T17:34:57.220Z","repository":{"id":100218769,"uuid":"156740002","full_name":"bcbi/awesome-pubmed-webapps","owner":"bcbi","description":"A collection of tools that search, mine and visualize biomedical literature","archived":false,"fork":false,"pushed_at":"2018-11-26T03:34:51.000Z","size":8,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":8,"default_branch":"master","last_synced_at":"2025-03-23T14:01:36.453Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bcbi.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2018-11-08T16:58:07.000Z","updated_at":"2020-12-26T00:31:26.000Z","dependencies_parsed_at":"2023-04-13T18:02:04.856Z","dependency_job_id":null,"html_url":"https://github.com/bcbi/awesome-pubmed-webapps","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2Fawesome-pubmed-webapps","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2Fawesome-pubmed-webapps/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2Fawesome-pubmed-webapps/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2Fawesome-pubmed-webapps/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bcbi","download_url":"https://codeload.github.com/bcbi/awesome-pubmed-webapps/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245938756,"owners_count":20697086,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-07T00:11:55.448Z","updated_at":"2026-01-06T17:34:57.150Z","avatar_url":"https://github.com/bcbi.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# Awesome PubMed Web Applications\n\nWe intend to maintain a list of web applications that search, mine and visualize biomedical literature. Only tools that are currently deployed and functioning propertly should be included. If you would like to add your work or update any of the information please submit a pull request or open an issue. \n\n**Notes on attributes:**\n\n* Publication: Referes to most recent related publication\n* Year: Refers to year of most recent related publication\n\n## References\nWe are aware that this list is by no means complete and we invite the community to contribute.\nThe initial list was inspired by this work https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/search/\n\n## Academic\n\n|Systems| Search | Mining | Visualization |Publication| Year |\n| --- | --- | --- | --- | --- | --- | \n|[HiPub](http://hipub.korea.ac.kr/) | x | x | x  | [27485446](https://www.ncbi.nlm.nih.gov/pubmed/27485446) | 2016 |\n|[Meshable](https://www.ncbi.nlm.nih.gov/CBBresearch/Wilbur/IRET/MESHABLE/)|x|||[27288493](https://www.ncbi.nlm.nih.gov/pubmed/27288493)|2016|\n|[iPubMed](http://ipubmed.ics.uci.edu) | x |  | | [Link](http://ipubmed.ics.uci.edu/pubs/) |  2014 | \n|[MedlineRanker](http://cbdm-01.zdv.uni-mainz.de/~jfontain/cms/)  | x | | |[19429696](https://www.ncbi.nlm.nih.gov/pubmed/19429696) | 2009 | \n|[MEDSUM](http://webtools.mf.uni-lj.si/public/medsum.html)| x | x | x | | 2009 |\n|[CISMeF](http://www.cismef.org/)  | x | |  | [18694229](https://www.ncbi.nlm.nih.gov/pubmed/18694229)|2007\n|[PubNet](http://pubnet.gersteinlab.org/) | x | x | x  | [16168087](https://www.ncbi.nlm.nih.gov/pubmed/16168087) | 2005 |\n|[PubCrawler](http://pubcrawler.gen.tcd.ie/) | x | | | [15215341](https://www.ncbi.nlm.nih.gov/pubmed/15215341) | 2004 |\n|[Chilibot](http://www.chilibot.net)|x|x|x|[15473905](https://www.ncbi.nlm.nih.gov/pubmed/15473905)|2004|\n\n## Government\n\n|Systems| Search | Mining | Visualization |Publication| Year |\n|---|---|---|---|---|---|\n|[EuropePMC](https://europepmc.org) | x | | | |\n|[Semantic MEDLINE](https://skr3.nlm.nih.gov/SemMed/index.html)|x|x|x|[Link](https://skr3.nlm.nih.gov/SemMedDB/Rindflesch2011.pdf)|2011|\n|[BabelMeSH](https://babelmesh.nlm.nih.gov)  | x | | | [17238631](https://www.ncbi.nlm.nih.gov/pubmed/17238631) | 2006 |\n|[askMEDLINE](http://askmedline.nlm.nih.gov/ask/ask.php) | x | | |[15760470](https://www.ncbi.nlm.nih.gov/pubmed/15760470) | 2005| \n|[SLIM](https://pmi.nlm.nih.gov/slim/)  | x | | | [16321145](https://www.ncbi.nlm.nih.gov/pubmed/16321145) | 2005 | \n\n## Private\n\n|Systems | Search | Mining | Visualization | Publication| Year | \n|---|---|---|---|---|---|\n|[NextBio](http://www.nextbio.com/b/search/lit.nb)|x|x|x|||\n|[CoreMineMedical](http://www.coremine.com/medical/#search)|x|x|x|||\n|[BibliMed](http://biblimed.fr/) | x | | |  | |\n|[Quertle](http://www.quertle.info)   | x | x | x  |  | | \n|[HubMed](http://git.macropus.org/hubmed/)  | x | | | [16845111](https://www.ncbi.nlm.nih.gov/pubmed/16845111)  | 2006 |\n|[GoPubMed](https://www.gopubmed.org/) | x | x | x | [15980585](https://www.ncbi.nlm.nih.gov/pubmed/15980585) | 2005 |\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbcbi%2Fawesome-pubmed-webapps","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbcbi%2Fawesome-pubmed-webapps","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbcbi%2Fawesome-pubmed-webapps/lists"}