{"id":22505009,"url":"https://github.com/bcbi/bcbi-base","last_synced_at":"2026-01-07T16:02:51.568Z","repository":{"id":100218802,"uuid":"187598812","full_name":"bcbi/BCBI-base","owner":"bcbi","description":null,"archived":false,"fork":false,"pushed_at":"2020-02-09T01:05:58.000Z","size":25,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-02-02T01:27:38.906Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bcbi.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":"CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-05-20T08:23:33.000Z","updated_at":"2020-12-26T00:32:27.000Z","dependencies_parsed_at":"2023-04-13T18:02:11.097Z","dependency_job_id":null,"html_url":"https://github.com/bcbi/BCBI-base","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2FBCBI-base","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2FBCBI-base/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2FBCBI-base/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2FBCBI-base/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bcbi","download_url":"https://codeload.github.com/bcbi/BCBI-base/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245938758,"owners_count":20697086,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-07T00:13:00.085Z","updated_at":"2026-01-07T16:02:46.527Z","avatar_url":"https://github.com/bcbi.png","language":"Julia","funding_links":[],"categories":[],"sub_categories":[],"readme":"# BCBI-base: Julia packages commonly used by the Brown Center for Biomedical Informatics (BCBI)\n\n[![Bors enabled](https://bors.tech/images/badge_small.svg)](https://app.bors.tech/repositories/12341)\n[![Build Status](https://travis-ci.org/bcbi/BCBI-base.svg?branch=master)](https://travis-ci.org/bcbi/BCBI-base/branches)\n\n## Usage\n\n```bash\ncd /path/to/desired/location\ngit clone https://github.com/bcbi/BCBI-base\ncd BCBI-base\njulia --project install.jl\n```\n\n## Creating custom environments\n\nIt is easy to create custom environments that contain any combination of packages.\n```bash\nmkdir my_environment_name\ncd my_environmnent_name\ntouch Project.toml\njulia —-project\n```\nNow that you are in Julia, you can add the specific combination of packages that you want. For example, the following commands will add `DecisionTree`, `GLM`, and `PredictMD` to your environment:\n```julia\nimport Pkg\nPkg.add([“DecisionTree”, “GLM”, “PredictMD”,])\n```\n\n## Troubleshooting\n\nIf you encounter an error, try running the following two lines:\n```bash\njulia --project clean.jl\njulia --project install.jl\n```\n\nIf this does not resolve the error, try running the following three lines:\n```bash\nrm -rf $HOME/.julia\njulia --project clean.jl\njulia --project install.jl\n```\n\nIf you are still encountering an error, please [open a new issue](https://github.com/bcbi/BCBI-base/issues/new).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbcbi%2Fbcbi-base","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbcbi%2Fbcbi-base","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbcbi%2Fbcbi-base/lists"}