{"id":22504994,"url":"https://github.com/bcbi/phylozoom-api","last_synced_at":"2026-01-08T04:02:18.651Z","repository":{"id":100219101,"uuid":"133955314","full_name":"bcbi/phylozoom-api","owner":"bcbi","description":null,"archived":false,"fork":false,"pushed_at":"2020-02-08T16:08:42.000Z","size":164,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-02-02T01:27:37.447Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://bcbi.brown.edu","language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bcbi.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-05-18T13:04:06.000Z","updated_at":"2020-12-26T00:31:24.000Z","dependencies_parsed_at":"2023-05-12T20:15:28.535Z","dependency_job_id":null,"html_url":"https://github.com/bcbi/phylozoom-api","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2Fphylozoom-api","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2Fphylozoom-api/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2Fphylozoom-api/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcbi%2Fphylozoom-api/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bcbi","download_url":"https://codeload.github.com/bcbi/phylozoom-api/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245938757,"owners_count":20697086,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-07T00:12:51.410Z","updated_at":"2026-01-08T04:02:18.584Z","avatar_url":"https://github.com/bcbi.png","language":"Julia","funding_links":[],"categories":[],"sub_categories":[],"readme":"## PhyloZoom API\n\n[![Travis](https://img.shields.io/travis/bcbi/phylozoom-frontend.svg?style=flat-square)](https://travis-ci.org/bcbi/phylozoom-frontend)\n[![License](https://img.shields.io/badge/license-MIT-orange.svg?style=flat-square)](https://github.com/bcbi/phylozoom-api/blob/master/LICENSE)\n[![Docker](https://img.shields.io/badge/docker-latest-000fff.svg?style=flat-square)](https://hub.docker.com/r/fernandogelin/phylozoom-api/)\n\n\n## Overview\nJulia API to parse and access subtrees of a large tree in [newick format](https://en.wikipedia.org/wiki/Newick_format).\nAt the moment the parser is specific to the tree in `src/hd_consensus_tree.nwk`. Eventually we plan to generalize the application.\n\nThis API serves as the backend of PhytoKB Tree View, which is a visualization tool based on [D3.js](https://d3js.org/) and [Phylotree.js](https://github.com/veg/phylotree.js/wiki/phylotree.js-API).\n\n## Requirements\n- [Julia 0.6](https://julialang.org/downloads/)\n- [HTTP.jl](https://github.com/JuliaWeb/HTTP.jl)\n\n## Usage\nTo run:\n```bash\njulia api/server.jl\n```\n\nThe API will be served to `0.0.0.0:8089`. You can use [Postman](https://www.getpostman.com/) to make API calls using the keys `id` and `levels` (how many levels up you want to navigate the tree from the taxon identified with ID).  \n\nEx.: `0.0.0.0:8089/?id=dr_1172206\u0026levels=1`\n\n## Using Docker\n\n```bash\ndocker pull bcbi/phylozoom-api\ndocker run -p 8089:8089 bcbi/phylozoom-api\n```\n\n## Or to run the web application with the frontend:\n```bash\ndocker-compose up\n```\nAnd navigate to `localhost:8080` on your browser.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbcbi%2Fphylozoom-api","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbcbi%2Fphylozoom-api","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbcbi%2Fphylozoom-api/lists"}