{"id":19154544,"url":"https://github.com/bcgsc/pori_graphkb_python","last_synced_at":"2025-05-07T06:30:23.894Z","repository":{"id":44675689,"uuid":"255752240","full_name":"bcgsc/pori_graphkb_python","owner":"bcgsc","description":"Python adapter package for querying the GraphKB API","archived":false,"fork":false,"pushed_at":"2024-06-26T20:50:08.000Z","size":3776,"stargazers_count":7,"open_issues_count":3,"forks_count":1,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-04-12T20:46:13.456Z","etag":null,"topics":["annotation","bioinformatics","graphdb","personalized-medicine","pori"],"latest_commit_sha":null,"homepage":"https://bcgsc.github.io/pori","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bcgsc.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-04-14T23:31:04.000Z","updated_at":"2023-10-24T15:53:14.000Z","dependencies_parsed_at":"2023-02-14T02:35:15.934Z","dependency_job_id":"d49ef0e9-e326-44eb-9192-b7dc90564cfa","html_url":"https://github.com/bcgsc/pori_graphkb_python","commit_stats":{"total_commits":249,"total_committers":8,"mean_commits":31.125,"dds":0.285140562248996,"last_synced_commit":"0088a8e13606cebbc916ab8f9992250cc2a5c236"},"previous_names":[],"tags_count":32,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcgsc%2Fpori_graphkb_python","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcgsc%2Fpori_graphkb_python/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcgsc%2Fpori_graphkb_python/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcgsc%2Fpori_graphkb_python/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bcgsc","download_url":"https://codeload.github.com/bcgsc/pori_graphkb_python/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":252826578,"owners_count":21810138,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["annotation","bioinformatics","graphdb","personalized-medicine","pori"],"created_at":"2024-11-09T08:27:17.251Z","updated_at":"2025-05-07T06:30:23.863Z","avatar_url":"https://github.com/bcgsc.png","language":"Python","readme":"\n# GraphKB (Python)\n\n![build](https://github.com/bcgsc/pori_graphkb_python/workflows/build/badge.svg) [![PyPi](https://img.shields.io/pypi/v/graphkb.svg)](https://pypi.org/project/graphkb) [![codecov](https://codecov.io/gh/bcgsc/pori_graphkb_python/branch/master/graph/badge.svg)](https://codecov.io/gh/bcgsc/pori_graphkb_python) [![PyPI - Downloads](https://img.shields.io/pypi/dm/graphkb)](https://pypistats.org/packages/graphkb) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5730523.svg)](https://doi.org/10.5281/zenodo.5730523)\n\nThis repository is part of the [platform for oncogenomic reporting and interpretation](https://github.com/bcgsc/pori).\n\nPython adapter package for querying the GraphKB API. See the [user manual](https://bcgsc.github.io/pori/graphkb/scripting/)\n\n- [Getting Started](#getting-started)\n  - [Install (For developers)](#install-for-developers)\n  - [Run Tests](#run-tests)\n- [Generating the Documentation](#generating-the-documentation)\n- [Deployment (Publishing)](#deployment-publishing)\n\n## Getting Started\n\n### Install (For developers)\n\nclone this repository\n\n```bash\ngit clone https://github.com/bcgsc/pori_graphkb_python\ncd pori_graphkb_python\n```\n\ncreate a virtual environment\n\n```bash\npython3 -m venv venv\nsource venv/bin/activate\n```\n\ninstall the package and its development dependencies\n\n```bash\npip install -U pip setuptools\npip install -e .[dev]\n```\n\n### Run Tests\n\n```bash\npytest tests\n```\n\n## Generating the Documentation\n\nUser documentation for this repository is hosted in the [central PORI repository](https://github.com/bcgsc/pori/)\n\n## Deployment (Publishing)\n\nInstall the deployment dependencies\n\n```bash\npip install .[deploy]\n```\n\nBuild the distribution files\n\n```bash\npython setup.py install sdist bdist_wheel\n```\n\nUpload the distibutions to the package server (`-r` is defined in your pypirc)\n\n```bash\ntwine upload -r bcgsc dist/*\n```\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbcgsc%2Fpori_graphkb_python","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbcgsc%2Fpori_graphkb_python","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbcgsc%2Fpori_graphkb_python/lists"}