{"id":19339501,"url":"https://github.com/becksteinlab/kda-examples","last_synced_at":"2025-10-05T14:23:38.519Z","repository":{"id":42202215,"uuid":"448602365","full_name":"Becksteinlab/kda-examples","owner":"Becksteinlab","description":"Kinetic Diagram Analysis Examples","archived":false,"fork":false,"pushed_at":"2024-08-10T20:17:09.000Z","size":11688,"stargazers_count":0,"open_issues_count":2,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-09-09T14:33:08.671Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Becksteinlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-01-16T16:00:58.000Z","updated_at":"2024-08-10T20:17:10.000Z","dependencies_parsed_at":"2024-03-27T18:46:07.706Z","dependency_job_id":"c3247854-c654-4e0e-9a87-e8ef0d1427fa","html_url":"https://github.com/Becksteinlab/kda-examples","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/Becksteinlab/kda-examples","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fkda-examples","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fkda-examples/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fkda-examples/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fkda-examples/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Becksteinlab","download_url":"https://codeload.github.com/Becksteinlab/kda-examples/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fkda-examples/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":278464382,"owners_count":25991191,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-05T02:00:06.059Z","response_time":54,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-10T03:22:29.681Z","updated_at":"2025-10-05T14:23:38.489Z","avatar_url":"https://github.com/Becksteinlab.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"Kinetic Diagram Analysis Examples\n====================================\n[//]: # (Badges)\n![CI](https://github.com/Becksteinlab/kda-examples/actions/workflows/main_ci.yml/badge.svg)\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10795714.svg)](https://doi.org/10.5281/zenodo.10795714)\n\nExample code for building models using [Kinetic Diagram Analysis](https://github.com/Becksteinlab/kda).\n\n## Examples\n\n\u003cimg src=\"kda_examples/test_model_3_state/diagrams/input.png\"  width=300 alt=\"test model 3-state\"\u003e \u003cimg src=\"kda_examples/test_model_4_state/diagrams/input.png\" width=300, alt=\"test model 4-state\"\u003e\n\u003cimg src=\"kda_examples/test_model_4_state_leakage/diagrams/input.png\" width=300, alt=\"test model 4-state leakage\"\u003e \u003cimg src=\"kda_examples/test_model_5_state_leakage/diagrams/input.png\" width=300, alt=\"test model 5-state leakage\"\u003e\n\u003cimg src=\"kda_examples/test_model_6_state/diagrams/input.png\" width=300, alt=\"test model 6-state\"\u003e \u003cimg src=\"kda_examples/test_model_6_state_leakage/diagrams/input.png\" width=300, alt=\"test model 6-state leakage\"\u003e\n\u003cimg src=\"kda_examples/test_model_8_state_leakage/diagrams/input.png\" width=300, alt=\"test model 8-state leakage\"\u003e\n\n## Adding Examples\n\nSee [PR #2](https://github.com/Becksteinlab/kda-examples/pull/2) for example on the minimum requirements for adding new examples to the repo.\n\n## Testing\n\nThis package has a testing module that checks if the example scripts execute\nwithout error. To run this test, simply install [KDA](https://github.com/Becksteinlab/kda), install\nthis package (instructions below) and run `pytest`.\n\n## Installation\n### Development version from source\n\nTo install the latest development version from source, run\n```bash\ngit clone git@github.com:Becksteinlab/kda-examples.git\ncd kda-examples\npython setup.py install\n```\n\n## Copyright\n\nCopyright (c) 2022, Nikolaus Awtrey\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbecksteinlab%2Fkda-examples","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbecksteinlab%2Fkda-examples","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbecksteinlab%2Fkda-examples/lists"}