{"id":19339551,"url":"https://github.com/becksteinlab/vesicle_library","last_synced_at":"2026-01-27T20:17:47.119Z","repository":{"id":137558707,"uuid":"43459450","full_name":"Becksteinlab/vesicle_library","owner":"Becksteinlab","description":"library of vesicles with the Dry Martini force field","archived":false,"fork":false,"pushed_at":"2016-05-30T04:39:42.000Z","size":54937,"stargazers_count":6,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-01-06T10:48:28.529Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Becksteinlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2015-09-30T21:11:38.000Z","updated_at":"2024-07-19T10:48:34.000Z","dependencies_parsed_at":"2023-10-20T18:20:58.680Z","dependency_job_id":null,"html_url":"https://github.com/Becksteinlab/vesicle_library","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fvesicle_library","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fvesicle_library/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fvesicle_library/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fvesicle_library/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Becksteinlab","download_url":"https://codeload.github.com/Becksteinlab/vesicle_library/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240442564,"owners_count":19801925,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-10T03:22:51.960Z","updated_at":"2026-01-27T20:17:47.094Z","avatar_url":"https://github.com/Becksteinlab.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# vesicle_library\n\nVesicles with the [Dry Martini](http://www.cgmartini.nl/index.php/299-dry-martini-beta) forcefield [1], constructed in \nvarying sizes, ranging from 10 nm to 30 nm radius. Results are summarized in a technical report [2]. All data are made available under the CC-BY license.\n\nA set of large vesicle systems, ranging in size from 1.75 M to 10 M particles are made available under doi:[10.6084/m9.figshare.3406708](https://doi.org/10.6084/m9.figshare.3406708).\n\n1. Clément Arnarez, Jaakko J. Uusitalo, Marcelo F. Masman, Helgi I. Ingólfsson, Djurre H. de Jong, Manuel N. Melo, \nXavier Periole, Alex H. de Vries, and Siewert J. Marrink.\nDry Martini, a Coarse-Grained Force Field for Lipid Membrane Simulations with Implicit Solvent. J. Chem. Theory Comput.,\n2015, 11 (1), pp 260–275. doi: [10.1021/ct500477k](http://doi.org/10.1021/ct500477k)\n2. Kenney, Ian M.; Beckstein, Oliver (2015): Technical Report: SPIDAL Summer REU 2015: Biomolecular benchmark systems. \nfigshare. doi: [10.6084/m9.figshare.1588804](http://dx.doi.org/10.6084/m9.figshare.1588804)\n\n\u003ca rel=\"license\" href=\"http://creativecommons.org/licenses/by/4.0/\"\u003e\u003cimg alt=\"Creative Commons License\" style=\"border-width:0\" src=\"https://i.creativecommons.org/l/by/4.0/88x31.png\" /\u003e\u003c/a\u003e \u003cspan xmlns:dct=\"http://purl.org/dc/terms/\" href=\"http://purl.org/dc/dcmitype/Dataset\" property=\"dct:title\" rel=\"dct:type\"\u003eVesicle Library\u003c/span\u003e by \u003ca xmlns:cc=\"http://creativecommons.org/ns#\" href=\"https://github.com/Becksteinlab/vesicle_library\" property=\"cc:attributionName\" rel=\"cc:attributionURL\"\u003eIan M. Kenney, Oliver Beckstein\u003c/a\u003e is licensed under a \u003ca rel=\"license\" href=\"http://creativecommons.org/licenses/by/4.0/\"\u003eCreative Commons Attribution 4.0 International License\u003c/a\u003e. Based on a work at \u003ca xmlns:dct=\"http://purl.org/dc/terms/\" href=\"https://github.com/Becksteinlab/vesicle_library\" rel=\"dct:source\"\u003ehttps://github.com/Becksteinlab/vesicle_library\u003c/a\u003e.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbecksteinlab%2Fvesicle_library","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbecksteinlab%2Fvesicle_library","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbecksteinlab%2Fvesicle_library/lists"}