{"id":19339491,"url":"https://github.com/becksteinlab/zarrtraj","last_synced_at":"2025-04-23T02:30:47.082Z","repository":{"id":218113187,"uuid":"741693338","full_name":"Becksteinlab/zarrtraj","owner":"Becksteinlab","description":"zarrtraj MDAKit for @MDAnalysis","archived":false,"fork":false,"pushed_at":"2025-02-24T03:47:48.000Z","size":28118,"stargazers_count":8,"open_issues_count":12,"forks_count":2,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-04-21T19:25:27.817Z","etag":null,"topics":["file-format","mdanalysis","molecular-dynamics","streaming","zarr"],"latest_commit_sha":null,"homepage":"https://zarrtraj.readthedocs.io/","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Becksteinlab.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS.md","dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-01-10T23:12:27.000Z","updated_at":"2025-02-24T03:47:52.000Z","dependencies_parsed_at":"2024-03-13T18:55:20.218Z","dependency_job_id":"42d52330-99de-4ccb-8509-35e0bedb6bba","html_url":"https://github.com/Becksteinlab/zarrtraj","commit_stats":null,"previous_names":["ljwoods2/zarrtraj","becksteinlab/zarrtraj"],"tags_count":7,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fzarrtraj","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fzarrtraj/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fzarrtraj/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Becksteinlab%2Fzarrtraj/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Becksteinlab","download_url":"https://codeload.github.com/Becksteinlab/zarrtraj/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":250357549,"owners_count":21417304,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["file-format","mdanalysis","molecular-dynamics","streaming","zarr"],"created_at":"2024-11-10T03:22:27.622Z","updated_at":"2025-04-23T02:30:47.038Z","avatar_url":"https://github.com/Becksteinlab.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"zarrtraj\n==============================\n[//]: # (Badges)\n\n| **Latest release** | [![Last release tag][badge_release]][url_latest_release] ![GitHub commits since latest release (by date) for a branch][badge_commits_since]  [![Documentation Status][badge_docs]][url_docs]|\n| :----------------- | :------- |\n| **Status**         | [![GH Actions Status][badge_actions]][url_actions] [![codecov][badge_codecov]][url_codecov] |\n| **Community**      | [![License: MIT][badge_license]][url_license]  [![Powered by MDAnalysis][badge_mda]][url_mda] [![Zenodo DOI](https://zenodo.org/badge/741693338.svg)](https://zenodo.org/badge/latestdoi/741693338) |\n\n[badge_actions]: https://github.com/Becksteinlab/zarrtraj/actions/workflows/gh-ci.yaml/badge.svg\n[badge_codecov]: https://codecov.io/gh/Becksteinlab/zarrtraj/branch/main/graph/badge.svg\n[badge_commits_since]: https://img.shields.io/github/commits-since/Becksteinlab/zarrtraj/latest\n[badge_docs]: https://readthedocs.org/projects/zarrtraj/badge/?version=latest\n[badge_license]: https://img.shields.io/badge/License-MIT-blue.svg\n[badge_mda]: https://img.shields.io/badge/powered%20by-MDAnalysis-orange.svg?logoWidth=16\u0026logo=data:image/x-icon;base64,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\n[badge_release]: https://img.shields.io/github/release-pre/Becksteinlab/zarrtraj.svg\n[url_actions]: https://github.com/Becksteinlab/zarrtraj/actions?query=branch%3Amain+workflow%3Agh-ci\n[url_codecov]: https://codecov.io/gh/Becksteinlab/zarrtraj/branch/main\n[url_docs]: https://zarrtraj.readthedocs.io/en/latest/?badge=latest\n[url_latest_release]: https://github.com/Becksteinlab/zarrtraj/releases\n[url_license]: https://opensource.org/license/mit\n[url_mda]: https://www.mdanalysis.org\n\nZarrtraj is an MDAnalysis MDAKit that provides the ability to read and write H5MD-formatted trajectory data in MDAnalysis using Zarr. \nZarrtraj can read trajectories locally and from AWS S3, Google Cloud Buckets, and Azure Blob Storage \u0026 DataLakes.\nIt can read both [H5MD-formatted files stored in hdf5](https://www.nongnu.org/h5md/h5md.html) (.h5md files) and [H5MD-formatted files stored \nin Zarr](https://zarrtraj.readthedocs.io/en/latest/zarrmd-file-spec/v0.2.0.html) (.zarrmd files).\n\nZarrtraj is installable via both pip and conda forge:\n```bash\npip install zarrtraj\n```\n```bash\nconda install -c conda-forge zarrtraj\n```\n\nFor more information on installation and usage, see the [zarrtraj documentation](https://zarrtraj.readthedocs.io/en/latest/index.html)\n\nZarrtraj is bound by a [Code of Conduct](https://github.com/Becksteinlab/zarrtraj/blob/main/CODE_OF_CONDUCT.md).\n\n### Copyright\n\nThe Zarrtraj source code is hosted at https://github.com/Becksteinlab/zarrtraj\nand is available under the MIT License (see the file [LICENSE](https://github.com/Becksteinlab/zarrtraj/blob/main/LICENSE)).\n\nCopyright (c) 2024, Lawson Woods\n\n\n#### Acknowledgements\n \nProject based on the \n[MDAnalysis Cookiecutter](https://github.com/MDAnalysis/cookiecutter-mda) version 0.1.\nPlease cite [MDAnalysis](https://github.com/MDAnalysis/mdanalysis#citation) when using Zarrtraj in published work.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbecksteinlab%2Fzarrtraj","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbecksteinlab%2Fzarrtraj","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbecksteinlab%2Fzarrtraj/lists"}