{"id":13719672,"url":"https://github.com/bedops/bedops","last_synced_at":"2025-04-04T19:03:53.597Z","repository":{"id":10691337,"uuid":"12932856","full_name":"bedops/bedops","owner":"bedops","description":":microscope: BEDOPS: high-performance genomic feature operations","archived":false,"fork":false,"pushed_at":"2024-01-28T01:11:29.000Z","size":96965,"stargazers_count":319,"open_issues_count":19,"forks_count":61,"subscribers_count":16,"default_branch":"master","last_synced_at":"2025-03-28T18:07:10.352Z","etag":null,"topics":["bed","bedops","bioinformatics","c","c-plus-plus","compression","conversion","genomics","parallel","pipeline","set","set-theory","toolkit"],"latest_commit_sha":null,"homepage":"https://bedops.readthedocs.io/","language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bedops.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2013-09-18T19:43:30.000Z","updated_at":"2025-03-17T14:39:29.000Z","dependencies_parsed_at":"2024-01-28T02:26:25.247Z","dependency_job_id":"f91beadb-24b0-42b6-a587-e0983416f75b","html_url":"https://github.com/bedops/bedops","commit_stats":{"total_commits":1853,"total_committers":18,"mean_commits":"102.94444444444444","dds":"0.34592552617377226","last_synced_commit":"71975aa4c7d6a23d44fb1b630eb33f6ca6f99a0c"},"previous_names":[],"tags_count":46,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bedops%2Fbedops","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bedops%2Fbedops/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bedops%2Fbedops/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bedops%2Fbedops/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bedops","download_url":"https://codeload.github.com/bedops/bedops/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247234920,"owners_count":20905854,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bed","bedops","bioinformatics","c","c-plus-plus","compression","conversion","genomics","parallel","pipeline","set","set-theory","toolkit"],"created_at":"2024-08-03T01:00:53.977Z","updated_at":"2025-04-04T19:03:53.577Z","avatar_url":"https://github.com/bedops.png","language":"C","funding_links":[],"categories":[],"sub_categories":[],"readme":"## BEDOPS v2.4.41: high-performance genomic feature operations ##\n\n[![BEDOPS CI](https://github.com/bedops/bedops/actions/workflows/main.yml/badge.svg)](https://github.com/bedops/bedops/actions/workflows/main.yml) [![GitHub stars](https://img.shields.io/github/stars/bedops/bedops.svg)](https://github.com/bedops/bedops/stargazers) [![Project license](https://img.shields.io/badge/license-GPLv2-blue.svg)](https://github.com/bedops/bedops/blob/master/LICENSE) [![Documentation Status](https://readthedocs.org/projects/bedops/badge/?version=latest)](https://readthedocs.org/projects/bedops/?badge=latest)\n\n\u003c!-- \u003cimg src=\"http://bedops.readthedocs.io/en/latest/_static/logo_with_label_v2.png\" align=\"right\" style=\"max-width:33%\" /\u003e --\u003e\n\n### About ###\n\n**BEDOPS v2.4.41** is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data. \n\nThe \u003ca href=\"https://bedops.readthedocs.io/en/latest/content/overview.html#overview\"\u003eoverview\u003c/a\u003e section of the **BEDOPS v2.4.41** documentation summarizes the toolkit, functionality and performance enhancements. The \u003ca href=\"https://bedops.readthedocs.io/en/latest/index.html#reference\"\u003ereference\u003c/a\u003e table offers documentation for all applications and scripts.\n\n\n### Downloads ###\n\n\u003ctable width=\"100%\"\u003e\n\u003ctr\u003e\n\u003cth width=\"33%\" align=\"left\"\u003e\nLinux\n\u003c/th\u003e\n\u003cth width=\"33%\" align=\"left\"\u003e\nMac OS X\n\u003c/th\u003e\n\u003cth width=\"34%\" align=\"left\"\u003e\nSource code\n\u003c/th\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd valign=\"top\"\u003e\n\u003cul style=\"list-style-type:square; font-size:smaller; margin-left:0; margin-right:0px; padding-right:0px; padding-left:20px;\"\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/bedops/bedops/releases/download/v2.4.41/bedops_linux_x86_64-v2.4.41.tar.bz2\"\u003ex86-64 (64-bit)\u003c/a\u003e binaries\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"http://bedops.readthedocs.io/en/latest/content/installation.html#linux\"\u003eInstallation instructions\u003c/a\u003e for Linux hosts\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/td\u003e\n\u003ctd valign=\"top\"\u003e\n\u003cul style=\"list-style-type:square; font-size:smaller; margin-left:0; margin-right:0px; padding-right:0px; padding-left:20px;\"\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/bedops/bedops/releases/download/v2.4.41/BEDOPS.2.4.41.pkg.zip\"\u003eIntel/Rosetta (64-bit, 10.10-11.4)\u003c/a\u003e installer package\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"http://bedops.readthedocs.io/en/latest/content/installation.html#mac-os-x\"\u003eInstallation instructions\u003c/a\u003e for Mac OS X hosts\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/td\u003e\n\u003ctd valign=\"top\"\u003e\n\u003cul style=\"list-style-type:square; font-size:smaller; margin-left:0; margin-right:0px; padding-right:0px; padding-left:20px;\"\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/bedops/bedops/archive/v2.4.41.tar.gz\"\u003eSource code\u003c/a\u003e (tar.gz)\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/bedops/bedops/archive/v2.4.41.zip\"\u003eSource code\u003c/a\u003e (zip)\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"http://bedops.readthedocs.io/en/latest/content/installation.html#installation-via-source-code\"\u003eCompilation instructions\u003c/a\u003e\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/td\u003e\n\u003c/tr\u003e\n\u003c/table\u003e\n\n### Documentation ###\n\nComplete documentation for **BEDOPS v2.4.41** tools is available at: \u003ca href=\"https://bedops.readthedocs.io/en/latest/index.html\"\u003ehttps://bedops.readthedocs.io/\u003c/a\u003e\n\n### Citation ###\n\nIf you use **BEDOPS v2.4.41** in your research, please cite the following manuscript:\n\n\u003e Shane Neph, M. Scott Kuehn, Alex P. Reynolds, et al.  \n\u003e [**BEDOPS: high-performance genomic feature operations**  \n\u003e *Bioinformatics* (2012) 28 (14): 1919-1920.] (http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract)\n\n### Copyright ###\n\n\u003e Copyright (C) 2011-2022 Shane J. Neph, M. Scott Kuehn and Alex P. Reynolds\n\u003e\n\u003e Source code, documentation and media assets released under \u003ca href=\"https://github.com/bedops/bedops/blob/master/LICENSE\"\u003eGNU Public License Version 2\u003c/a\u003e (GPL v2).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbedops%2Fbedops","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbedops%2Fbedops","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbedops%2Fbedops/lists"}