{"id":16146692,"url":"https://github.com/benhg/julia","last_synced_at":"2025-04-06T21:44:04.873Z","repository":{"id":93640708,"uuid":"238763131","full_name":"benhg/JULIA","owner":"benhg","description":null,"archived":false,"fork":false,"pushed_at":"2020-04-23T21:02:00.000Z","size":84,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-02-13T03:46:41.028Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/benhg.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-02-06T19:06:03.000Z","updated_at":"2020-04-23T21:02:02.000Z","dependencies_parsed_at":"2023-04-03T09:59:43.276Z","dependency_job_id":null,"html_url":"https://github.com/benhg/JULIA","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/benhg%2FJULIA","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/benhg%2FJULIA/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/benhg%2FJULIA/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/benhg%2FJULIA/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/benhg","download_url":"https://codeload.github.com/benhg/JULIA/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247557798,"owners_count":20958047,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-10T00:21:23.834Z","updated_at":"2025-04-06T21:44:04.843Z","avatar_url":"https://github.com/benhg.png","language":"Python","readme":"# JULIA\n\n## What is this?\n\nJULIA is a project designed to explain/verify taxon source within a large and complex dataset of possibly contaminated transcriptomes. By \"contaminated,\" here we mean we are not sure exactly from where each of our transcripts came.\n\n## How does it work?\n\nJULIA uses Parsl as an execution environment to carry out alignment and indexing at scale.\n\n## How do I use it?\n\n1. Locate a database of raw reads\n2. Create a FASTA file of input transcripts\n3. Call JULIA using python and Parsl\n4. Extract results with JULIA's data-extraction application.\n\n## What does it do?\n\nUsing Alex Dobin's STAR to perform alignment, JULIA indexes and aligns transcripts against a database of raw reads. From there, it is able to generate information about taxon source for each of the transcripts input to it.\n\n## Who wrote it?\n\nEllen Richards and Ben Glick, expanding on an earlier project by Julia Somers, with advisory support from Greta Binford.\n\n## Who is it named after?\n\nWhile JULIA is an acronym, it is additionally named after Julia Somers, Lewis \u0026 Clark Class of 2019, who designed the project that preceeded it.\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbenhg%2Fjulia","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbenhg%2Fjulia","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbenhg%2Fjulia/lists"}