{"id":20551823,"url":"https://github.com/benmarwick/kwakmarwickaas2015","last_synced_at":"2026-03-08T02:06:00.359Z","repository":{"id":33693515,"uuid":"37346451","full_name":"benmarwick/kwakmarwickaas2015","owner":"benmarwick","description":null,"archived":false,"fork":false,"pushed_at":"2017-03-27T23:46:37.000Z","size":3997,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-03-06T05:47:51.911Z","etag":null,"topics":["compendium","reproducible-paper"],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/benmarwick.png","metadata":{"files":{"readme":"readme.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-06-12T21:55:55.000Z","updated_at":"2017-11-01T03:48:14.000Z","dependencies_parsed_at":"2022-08-31T19:24:51.739Z","dependency_job_id":null,"html_url":"https://github.com/benmarwick/kwakmarwickaas2015","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/benmarwick/kwakmarwickaas2015","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/benmarwick%2Fkwakmarwickaas2015","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/benmarwick%2Fkwakmarwickaas2015/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/benmarwick%2Fkwakmarwickaas2015/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/benmarwick%2Fkwakmarwickaas2015/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/benmarwick","download_url":"https://codeload.github.com/benmarwick/kwakmarwickaas2015/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/benmarwick%2Fkwakmarwickaas2015/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30242405,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-08T00:58:18.660Z","status":"online","status_checked_at":"2026-03-08T02:00:06.215Z","response_time":56,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["compendium","reproducible-paper"],"created_at":"2024-11-16T02:33:51.712Z","updated_at":"2026-03-08T02:06:00.336Z","avatar_url":"https://github.com/benmarwick.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Supplementary Materials for \"Food processing and pottery use in the Early Bronze Age, Central part of the Korean Peninsula\"\r\n\r\n### Compendium DOI: http://dx.doi.org/10.6084/m9.figshare.1444025\r\n\r\n### Authors of this repository:\r\nSeungki Kwak and Ben Marwick (skkwak@uw.edu, bmarwick@uw.edu)\r\n\r\n### How to use:\r\n\r\nFirst, ensure that you have installed R, RStudio, and the `ggplot2` package. We also recommend installing the dependencies listed below to recreate our computational environment. \r\n\r\nSecond, download and unzip our compendium from [http://dx.doi.org/10.6084/m9.figshare.1444025](http://dx.doi.org/10.6084/m9.figshare.1444025) or clone it from github.\r\n\r\nThird, once you have a local copy of the compendium, open and run the `kwak_marwick_jas.Rproj` file in RStudio. This will set the working directory to the location of the files.\r\n\r\nFourth, run `devtools::install(\"kwakmarwick2015\")` to install the functions used by this compendium. \r\n\r\nFifth, look in the `analysis/` directory and open the `analysis.Rmd` file in RStudio. Then run `rmarkdown::render()` or click the 'knit' button in RStudio. This will generate a HTML document that includes the plots from the manuscript. \r\n### Contents\r\n\r\nThe `analysis/` folder contains an R markdown file that, when executed, will generate the figures found in the manuscript.\r\n\r\nAlso within the `analysis/` folder is the `data/` folder which contains CSV files. \r\n\r\n\"sampling_Kimpo.CSV\" and \"sampling_Sosa.CSV\" are the data files of the entire collected samples in this paper. \r\n\r\n\"CSIA_KM.CSV\" and \"CSIA_SS.CSV\" are the data files of GC-MS and compound specific isotope analysis. CSIA_KM.CSV contains data from the Kimpo-Yangchon site. CSIA_SS.CSV contains data from the Sosa-Dong site.\r\n\r\n\"GC-MS_exported_data_Figure5a/b.CSV\" is the data file that includes retention time and peak area data of the GC-MS chromatogram in the paper (Figure 5).\r\n\r\nThe `R/` folder contains an a R script file with our two custom plotting functions. These functions are for general use with GC-MS and CSIA data relating to archaeological foodways. The other items in our compendium are typical components of a simple R package. \r\n\r\nLicenses:\r\n\r\nText: CC-BY-4.0 http://creativecommons.org/licenses/by/4.0/\r\nCode: MIT http://opensource.org/licenses/MIT 2015 Kwak \u0026 Marwick\r\nData: CC0 http://creativecommons.org/publicdomain/zero/1.0/ attribution requested in reuse\r\n\r\nDependencies:\r\n\r\nThe pacakges required to run this code are listed in the `DESCRIPTION` file. The `analsyis.html` file also has details of the specific computational environment that we used to generate thr figures.\r\n\r\nContact:\r\n\r\nSeungki Kwak, Doctoral candidate, Department of Anthropology, Denny Hall 117, Box 353100, University of Washington Seattle, WA 98195-3100 USA\r\nt. (+1) 206.543.5240 e. skkwak@uw.edu f. (+1) 206.543.3285 w. http://depts.washington.edu/anthweb/users/skkwak\r\n\r\nBen Marwick, Assistant Professor, Department of Anthropology, Denny Hall 117, Box 353100, University of Washington Seattle, WA 98195-3100 USA\r\nt. (+1) 206. 543.5240 e. bmarwick@uw.edu f. (+1) 206.543.3285 w. http://faculty.washington.edu/bmarwick/\r\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbenmarwick%2Fkwakmarwickaas2015","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbenmarwick%2Fkwakmarwickaas2015","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbenmarwick%2Fkwakmarwickaas2015/lists"}