{"id":43183932,"url":"https://github.com/berenslab/umi-normalization","last_synced_at":"2026-02-01T04:08:54.880Z","repository":{"id":128722854,"uuid":"304331088","full_name":"berenslab/umi-normalization","owner":"berenslab","description":"Companion repository to Lause, Berens \u0026 Kobak (2021): \"Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data\", Genome Biology","archived":false,"fork":false,"pushed_at":"2022-05-06T14:26:24.000Z","size":93498,"stargazers_count":40,"open_issues_count":2,"forks_count":2,"subscribers_count":7,"default_branch":"main","last_synced_at":"2025-09-09T15:04:43.796Z","etag":null,"topics":["dimensionality-reduction","gene-selection","glm-pca","negative-binomial","negative-binomial-model","negative-binomial-regression","normalization","scrna","single-cell-analysis","single-cell-rna-seq","t-sne","umi-count","umi-count-matrix"],"latest_commit_sha":null,"homepage":"https://doi.org/10.1186/s13059-021-02451-7","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"agpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/berenslab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2020-10-15T13:14:35.000Z","updated_at":"2025-01-27T08:57:32.000Z","dependencies_parsed_at":"2023-04-07T09:30:57.350Z","dependency_job_id":null,"html_url":"https://github.com/berenslab/umi-normalization","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/berenslab/umi-normalization","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/berenslab%2Fumi-normalization","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/berenslab%2Fumi-normalization/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/berenslab%2Fumi-normalization/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/berenslab%2Fumi-normalization/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/berenslab","download_url":"https://codeload.github.com/berenslab/umi-normalization/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/berenslab%2Fumi-normalization/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28967113,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-01T03:46:10.227Z","status":"ssl_error","status_checked_at":"2026-02-01T03:46:01.693Z","response_time":56,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["dimensionality-reduction","gene-selection","glm-pca","negative-binomial","negative-binomial-model","negative-binomial-regression","normalization","scrna","single-cell-analysis","single-cell-rna-seq","t-sne","umi-count","umi-count-matrix"],"created_at":"2026-02-01T04:08:50.176Z","updated_at":"2026-02-01T04:08:50.765Z","avatar_url":"https://github.com/berenslab.png","language":"Jupyter Notebook","readme":null,"funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fberenslab%2Fumi-normalization","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fberenslab%2Fumi-normalization","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fberenslab%2Fumi-normalization/lists"}