{"id":21882273,"url":"https://github.com/bfssi-bioinformatics-lab/vfdbquery","last_synced_at":"2025-03-22T01:14:59.051Z","repository":{"id":40985301,"uuid":"153801793","full_name":"BFSSI-Bioinformatics-Lab/vfdbQuery","owner":"BFSSI-Bioinformatics-Lab","description":"  vfdbQuery is a simple script for querying an input genome assembly against the Virulence Factor Database (VFDB)","archived":false,"fork":false,"pushed_at":"2022-12-08T01:14:43.000Z","size":11,"stargazers_count":1,"open_issues_count":2,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-03-17T23:56:54.622Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BFSSI-Bioinformatics-Lab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-10-19T15:09:46.000Z","updated_at":"2024-05-27T05:38:32.000Z","dependencies_parsed_at":"2023-01-25T02:31:04.670Z","dependency_job_id":null,"html_url":"https://github.com/BFSSI-Bioinformatics-Lab/vfdbQuery","commit_stats":null,"previous_names":["bfssi-forest-dussault/vfdbquery"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BFSSI-Bioinformatics-Lab%2FvfdbQuery","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BFSSI-Bioinformatics-Lab%2FvfdbQuery/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BFSSI-Bioinformatics-Lab%2FvfdbQuery/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BFSSI-Bioinformatics-Lab%2FvfdbQuery/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BFSSI-Bioinformatics-Lab","download_url":"https://codeload.github.com/BFSSI-Bioinformatics-Lab/vfdbQuery/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":244890097,"owners_count":20527035,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-28T09:28:05.121Z","updated_at":"2025-03-22T01:14:59.025Z","avatar_url":"https://github.com/BFSSI-Bioinformatics-Lab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# vfdbQuery\n\n### Requirements\n- Python 3.6\n- [ncbi-blast+](https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs\u0026DOC_TYPE=Download) (makeblastdb and blastn must be in your $PATH)\n\n### Installation\n```\npip install vfdbQuery\n```\n\n### Usage\n```\nUsage: vfdbQuery [OPTIONS]\n\n  vfdbQuery is a simple script for querying an input genome assembly against\n  the Virulence Factor Database (VFDB).\n\nOptions:\n  -i, --infile PATH     FASTA file that you want to search against VFDB\n                        [required]\n  -db, --database PATH  Path to Virulence Factor Database (VFDB)  [required]\n  --help                Show this message and exit.\n\n```","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbfssi-bioinformatics-lab%2Fvfdbquery","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbfssi-bioinformatics-lab%2Fvfdbquery","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbfssi-bioinformatics-lab%2Fvfdbquery/lists"}