{"id":37617653,"url":"https://github.com/bio-phys/binless-wham","last_synced_at":"2026-01-16T10:33:33.687Z","repository":{"id":92566339,"uuid":"228868059","full_name":"bio-phys/binless-wham","owner":"bio-phys","description":"Binless weighted histogram analysis ","archived":false,"fork":false,"pushed_at":"2019-12-20T15:20:01.000Z","size":10,"stargazers_count":4,"open_issues_count":0,"forks_count":2,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-09-09T16:20:42.954Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bio-phys.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2019-12-18T15:24:07.000Z","updated_at":"2025-02-21T10:22:20.000Z","dependencies_parsed_at":null,"dependency_job_id":"afbf99c2-e7a7-428b-aa06-ed40d1f47277","html_url":"https://github.com/bio-phys/binless-wham","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/bio-phys/binless-wham","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fbinless-wham","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fbinless-wham/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fbinless-wham/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fbinless-wham/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bio-phys","download_url":"https://codeload.github.com/bio-phys/binless-wham/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fbinless-wham/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28478050,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-16T06:30:42.265Z","status":"ssl_error","status_checked_at":"2026-01-16T06:30:16.248Z","response_time":107,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-01-16T10:33:33.032Z","updated_at":"2026-01-16T10:33:33.675Z","avatar_url":"https://github.com/bio-phys.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"Installation\n============\n\npip install -e .\n\n\nUsage\n=====\n\nKey input is an array u_kj with the relative bias energy for each structure (with respect to each biased simulation/ window).\n\nHere k indices structures and j biased simulations.\n\nu_kj is structured as follows:\n\n        Window index (stru_1), u_win_1(stru_1), .. u_win_n(stru_1) \n        Window index (stru_2), u_win_1(stru_2), .. u_win_n(stru_2) \n        ...\n        Window index (stru_n), u_win_1(stru_n), .. u_win_n(stru_n)\n        \nHere u_win_n(stru_n), stands for the energy of structure n n in simulation window/run n. Each structure has to be evaluated under each simulation condition (i.e., the the energy function acting in each window). \n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbio-phys%2Fbinless-wham","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbio-phys%2Fbinless-wham","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbio-phys%2Fbinless-wham/lists"}