{"id":37617643,"url":"https://github.com/bio-phys/cnt-lipid14-analysis","last_synced_at":"2026-01-16T10:33:31.900Z","repository":{"id":92566460,"uuid":"119987519","full_name":"bio-phys/cnt-lipid14-analysis","owner":"bio-phys","description":"Analysis tools for simulations of carbon nanotubes (CNTs) in lipid membranes modeled with the Lipid14 force field.","archived":false,"fork":false,"pushed_at":"2019-12-10T02:32:37.000Z","size":26,"stargazers_count":3,"open_issues_count":0,"forks_count":2,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-09-09T19:34:52.662Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bio-phys.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-02-02T13:50:47.000Z","updated_at":"2024-12-09T10:59:15.000Z","dependencies_parsed_at":null,"dependency_job_id":"95b9e227-df94-46fa-b273-5aeaed133e1f","html_url":"https://github.com/bio-phys/cnt-lipid14-analysis","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/bio-phys/cnt-lipid14-analysis","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fcnt-lipid14-analysis","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fcnt-lipid14-analysis/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fcnt-lipid14-analysis/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fcnt-lipid14-analysis/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bio-phys","download_url":"https://codeload.github.com/bio-phys/cnt-lipid14-analysis/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-phys%2Fcnt-lipid14-analysis/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28478050,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-16T06:30:42.265Z","status":"ssl_error","status_checked_at":"2026-01-16T06:30:16.248Z","response_time":107,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-01-16T10:33:31.323Z","updated_at":"2026-01-16T10:33:31.886Z","avatar_url":"https://github.com/bio-phys.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# This project contains\n\nAnalysis of Lipid14 simulations\n - order14.py: Calculates the deuterium order parameter of the lipids (works without CNT).\n\nAnalysis of Lipid14 simulations with a CNT\n - order14distance.py: Calculates the order parameter as a function of the annular shell around the CNT axis.\n - order14distance-manyCNTs: same as above, but adds a category for lipids shared between two CNTs.\n - cntmotion.py: Calculates the COM motion and the tilting angle of a CNT (works with any lipids).\n - rdf14.py: Calculates the radial distribution of a given atom type aroud the CNT axis.\n\nRequired geometry functions\n - geometry.py\n\n#  Requirements: \n - Python 2.7\n - Python packages: sys, argparse, numpy, scipy, MDAnalysis\n\n# Literature\n - M. Vögele, J. Köfinger, G. Hummer: \n   Simulations of Carbon Nanotube Porins in Lipid Bilayers.\n   Faraday Discuss., 2018, Accepted Manuscript, DOI: 10.1039/C8FD00011E  \n   http://pubs.rsc.org/en/content/articlelanding/2018/fd/c8fd00011e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbio-phys%2Fcnt-lipid14-analysis","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbio-phys%2Fcnt-lipid14-analysis","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbio-phys%2Fcnt-lipid14-analysis/lists"}