{"id":37083800,"url":"https://github.com/bio2bel/hmdd","last_synced_at":"2026-01-14T10:14:01.377Z","repository":{"id":57415193,"uuid":"95350762","full_name":"bio2bel/hmdd","owner":"bio2bel","description":"A Bio2BEL package for converting the Human microRNA Disease Database (HMDD) to BEL","archived":false,"fork":false,"pushed_at":"2018-11-21T21:20:35.000Z","size":36,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-09-14T08:48:26.815Z","etag":null,"topics":["biological-expression-language","microrna","phenotypes","systems-biology"],"latest_commit_sha":null,"homepage":"http://bio2bel-hmdd.rtfd.io","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bio2bel.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-06-25T09:39:44.000Z","updated_at":"2018-11-21T21:20:36.000Z","dependencies_parsed_at":"2022-09-09T23:23:11.609Z","dependency_job_id":null,"html_url":"https://github.com/bio2bel/hmdd","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/bio2bel/hmdd","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio2bel%2Fhmdd","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio2bel%2Fhmdd/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio2bel%2Fhmdd/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio2bel%2Fhmdd/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bio2bel","download_url":"https://codeload.github.com/bio2bel/hmdd/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio2bel%2Fhmdd/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28416700,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-14T08:38:59.149Z","status":"ssl_error","status_checked_at":"2026-01-14T08:38:43.588Z","response_time":107,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["biological-expression-language","microrna","phenotypes","systems-biology"],"created_at":"2026-01-14T10:14:00.800Z","updated_at":"2026-01-14T10:14:01.369Z","avatar_url":"https://github.com/bio2bel.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"Bio2BEL HMDD |docs|\n===================\nConverts the Human microRNA Disease Database to BEL\n\nCitation\n--------\nLi Y, Qiu C, Tu J, et al. HMDD v2.0: a database for experimentally supported human microRNA and disease associations. Nucleic Acids Research. 2014;42(Database issue):D1070-D1074. doi:10.1093/nar/gkt1023.\n\nAbstract\n--------\nHMDD (the Human microRNA Disease Database) is a database that curated experiment-supported evidence for human microRNA (miRNA) and disease associations. miRNAs are one class of important regulatory RNAs, which mainly repress gene express at the post-transcriptional level. Increasing reports have shown that miRNAs play important roles in various critical biological processes. For their importance, the dysfunctions of miRNAs are associated with a broad spectrum of diseases. The first version of HMDD was built on December 2007. Each entry in HMDD v1.0 has four items for annotation; they are miRNA name, disease name, the reference PubMed ID, and the evidence supporting the miRNA-association from the original paper. During the past five years, we updated HMDD for more than 30 times. HMDD v2.0 presents more detailed and comprehensive annotations to the human miRNA-disease association data, including miRNA-disease association data from the evidence of genetics, epigenetics, circulating miRNAs, and miRNA-target interactions. In addition, a “submission” function was implemented in the version 2.\n\nLinks\n-----\n- Database: http://www.cuilab.cn/hmdd\n- Data: http://www.cuilab.cn/files/images/hmdd2/alldata.txt\n\n.. |docs| image:: http://readthedocs.org/projects/bio2bel-hmdd/badge/?version=latest\n    :target: http://bio2bel.readthedocs.io/projects/hmdd/en/latest/?badge=latest\n    :alt: Documentation Status\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbio2bel%2Fhmdd","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbio2bel%2Fhmdd","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbio2bel%2Fhmdd/lists"}