{"id":15007270,"url":"https://github.com/bioarchlinux/packages","last_synced_at":"2025-04-06T08:15:51.400Z","repository":{"id":38443755,"uuid":"394680538","full_name":"BioArchLinux/Packages","owner":"BioArchLinux","description":"Aim to be the bioinformatics repository with more and newer 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align=\"center\"\u003e\n\u003cimg src=\"https://raw.githubusercontent.com/BioArchLinux/Packages/master/logo/bioarchlinux.png\" alt=\"BioArchLinux\" width=\"150\"\u003e\n\u003c/p\u003e\nBioArchLinux\u003c/h3\u003e\n\n\u003ch3 align=\"center\"\u003e\n\u003ca href=\"https://bioarchlinux.org/packages\"\u003ePackages\u003c/a\u003e \u003ca href=\"https://wiki.bioarchlinux.org\"\u003eWiki\u003c/a\u003e \u003ca href=\"https://matrix.to/#/#bioarchlinux:matrix.org\"\u003eMatrix\u003c/a\u003e \u003ca href=\"https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio\"\u003eMirror\u003c/a\u003e \u003ca href=\"https://repo.bioarchlinux.org\"\u003eRepo\u003c/a\u003e \u003ca href=\"https://build.bioarchlinux.org\"\u003eStatus\u003c/a\u003e\n\u003c/h3\u003e\n\n## Special sponsor\n\n\u003cdiv\u003e\n\u003ca href=\"https://v.ps/\" target=\"_blank\"\u003e\u003cimg height=\"70px\" src=\"https://raw.githubusercontent.com/BioArchLinux/Packages/master/logo/xtom.png\"\u003e\u003c/a\u003e\n\u003c/div\u003e\n\n## Usage\n\n### ArchLinux and ArchLinux based distributions\n\nAdd the following content to the `/etc/pacman.conf`\n```\n[bioarchlinux]\nServer = https://repo.bioarchlinux.org/$arch\n```\nYou can replace the `https://repo.bioarchlinux.org/$arch` with any mirror in [mirrorlist](https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio)\n\ninstall GPG keyring to use bioarchlinux\n```\n# pacman-key --recv-keys B1F96021DB62254D\n# pacman-key --finger B1F96021DB62254D\n# pacman-key --lsign-key B1F96021DB62254D\n```\n\nupdate the database\n```\n# pacman -Syu\n```\n\ninstall any package\n```\n# pacman -S foo\n```\n\n### Windows\n\nYou can use [WSL](https://docs.microsoft.com/en-us/windows/wsl/install) to use our repo, see [here](https://github.com/BioArchLinux/wsl)\n\n### Docker \nYou can use [docker](https://hub.docker.com/r/bioarchlinux/bioarchlinux) to use our repo, see [here](https://github.com/BioArchLinux/docker)\n\n### ISO\nYou can use ISO image via virtual machine software to use our repo, see [here](https://github.com/BioArchLinux/iso)\n\n### non-root Linux users\nYou can use [junest](https://github.com/fsquillace/junest) BioArchLinux image to use our repo, see [here](https://github.com/BioArchLinux/junest-img)\n\n## Citation\n\n\u003e Zhang G, Ristola P, Su H, Kumar B, Zhang B, Hu Y, Elliot MG, Drobot V, Zhu J, Staal J, Larralde M, Wang S, Yi Y, Yu H. 2025. BioArchLinux: community-driven fresh reproducible software repository for life science. Bioinformatics: btaf106. https://doi.org/10.1093/bioinformatics/btaf106\n\u003e \n\u003e Zhang G, Hu Y, Drobot V, Staal J, Yi Y, Elliot MG. 2022. BioArchLinux: bioinformatics community with Arch Linux. F1000Research 11: 809. https://doi.org/10.7490/f1000research.1119039.1\n\n[Get Bibtex Here](https://raw.githubusercontent.com/BioArchLinux/Packages/master/BioArchLinux.bibtex)\n\n## Submitting packages\nThose wishing to submit 'PKGBUILD' for packages to repo please refer to [adding packages](/Documentation/adding%20packages.md) document \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioarchlinux%2Fpackages","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbioarchlinux%2Fpackages","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioarchlinux%2Fpackages/lists"}