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Provided via a dockerized FastAPI server.\n\n## Features and modules\n\nThese are the currently provided modules:\n\n| Module        |                    Features                     | External Dependencies |\n|---------------|:-----------------------------------------------:|:---------------------:|\n| embeddings    |             Embed protein sequences             |     [biotrainer]      |\n| ppi           |     Work with protein-protein interactions      |     [hvi_toolkit]     |\n| predict       |   Create predictions from pre-trained models    |   [TMbed], [VespaG]   |\n| custom_models | Train and evaluate models trained on embeddings |     [biotrainer]      |\n| proteins      |             Work with protein data              |       [taxoniq]       |\n| plm_eval      | Automatically evaluate protein language models  |  [biotrainer], [PBC]  |\n\n[biotrainer]: https://github.com/sacdallago/biotrainer\n\n[hvi_toolkit]: https://github.com/SebieF/hvi_toolkit\n\n[taxoniq]: https://github.com/taxoniq/taxoniq\n\n[PBC]: https://github.com/Rostlab/pbc\n\n[TMbed]: https://github.com/BernhoferM/TMbed\n\n[VespaG]: https://github.com/JSchlensok/VespaG/\n\n\n## Installing and running\n\nSee the docs on [how to get started](/docs/getting_started.md) with biocentral_server.\n\nFor development, see the [development guide](/docs/Contributing/development_setup.md).\n\n## Citation\n\nPlease cite the [biocentral main repository](https://github.com/biocentral/biocentral) if you are using\nbiocentral_server in your scientific publication:\n\n```text\n@Online{biocentral,\n  accessed = {2024-09-10},\n  author   = {Biocentral contributors},\n  title    = {Biocentral - An open source bioinformatics application},\n  url      = {https://github.com/biocentral/biocentral},\n}\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiocentral%2Fbiocentral_server","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiocentral%2Fbiocentral_server","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiocentral%2Fbiocentral_server/lists"}