{"id":19623919,"url":"https://github.com/bioconductor/bioccheck","last_synced_at":"2025-04-05T07:05:54.136Z","repository":{"id":33305721,"uuid":"36950458","full_name":"Bioconductor/BiocCheck","owner":"Bioconductor","description":null,"archived":false,"fork":false,"pushed_at":"2025-03-28T17:27:37.000Z","size":5205,"stargazers_count":8,"open_issues_count":22,"forks_count":27,"subscribers_count":13,"default_branch":"devel","last_synced_at":"2025-03-29T06:07:28.951Z","etag":null,"topics":["bioconductor-package","core-services"],"latest_commit_sha":null,"homepage":"http://bioconductor.org/packages/BiocCheck","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Bioconductor.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2015-06-05T19:07:09.000Z","updated_at":"2025-03-28T17:06:48.000Z","dependencies_parsed_at":"2023-01-15T00:26:37.925Z","dependency_job_id":"15bef616-d70e-492b-8dc8-369541f26fe8","html_url":"https://github.com/Bioconductor/BiocCheck","commit_stats":{"total_commits":1052,"total_committers":33,"mean_commits":31.87878787878788,"dds":0.7214828897338403,"last_synced_commit":"7e7e07e1dfd8ddae8bf14d35e9df0add09aad61a"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FBiocCheck","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FBiocCheck/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FBiocCheck/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FBiocCheck/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor","download_url":"https://codeload.github.com/Bioconductor/BiocCheck/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247299832,"owners_count":20916190,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor-package","core-services"],"created_at":"2024-11-11T11:36:06.042Z","updated_at":"2025-04-05T07:05:54.117Z","avatar_url":"https://github.com/Bioconductor.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# [BiocCheck](https://bioconductor.org/packages/BiocCheck)\n\n---\n\n\u003c!-- badges: start --\u003e\n[![BioC status](http://www.bioconductor.org/shields/build/devel/bioc/BiocCheck.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/BiocCheck)\n[![Platforms](http://www.bioconductor.org/shields/availability/devel/BiocCheck.svg)](https://www.bioconductor.org/packages/devel/bioc/html/BiocCheck.html#archives)\n[![Codecov test coverage](https://codecov.io/gh/Bioconductor/BiocCheck/graph/badge.svg)](https://app.codecov.io/gh/Bioconductor/BiocCheck)\n[![Downloads](http://www.bioconductor.org/shields/downloads/devel/BiocCheck.svg)](https://bioconductor.org/packages/stats/bioc/BiocCheck)\n\u003c!-- badges: end --\u003e\n\nThe `BiocCheck` package provides a set of tools for checking a package\nagainst the current version of Bioconductor coding and style standards.\n\n## Installation \n\nTo install this package, start R and enter:\n\n```r\nif (!requireNamespace(\"BiocManager\", quietly = TRUE))\n    install.packages(\"BiocManager\")\n\nBiocManager::install(\"BiocCheck\")\n```\n\n## Bioconductor Guidelines\n\nThe Bioconductor guidelines are available at\nhttps://contributions.bioconductor.org/. This site provides the basis for\nmany of the checks performed by `BiocCheck`. We encourage packages to\nfollow these guidelines to ensure that they are of high quality and\ninteroperate well with other Bioconductor packages.\n\n## Usage\n\nTo check a package, use the `BiocCheck::BiocCheck()` function. For\nexample, to check the `BiocCheck` package itself, use:\n\n```r\nBiocCheck::BiocCheck(\"BiocCheck\")\n```\n\nin the directory above the source package directory. \n\nNote that the `BiocCheck` package must be installed to use this function.\n\nIf you are using RStudio, you can use the `BiocCheck` addin to check a\npackage. First, install the BiocAddins package:\n\n```r\nBiocManager::install(\"Bioconductor/BiocAddins\")\n```\n\nThen, in RStudio, click on the \"Addins\" menu, and select \"Run BiocCheck\".\n\n## Documentation\n\nThe `BiocCheck` package contains a vignette that describes the package\nin more detail. To view the vignette, start R and enter:\n\n```r\nvignette(\"BiocCheck\")\n```\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioconductor%2Fbioccheck","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbioconductor%2Fbioccheck","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioconductor%2Fbioccheck/lists"}