{"id":19624163,"url":"https://github.com/bioconductor/intermediater","last_synced_at":"2025-02-26T19:34:55.305Z","repository":{"id":146388491,"uuid":"69557260","full_name":"Bioconductor/IntermediateR","owner":"Bioconductor","description":"Intermediate R course offered to members of RPCI / SUNY at Buffalo","archived":false,"fork":false,"pushed_at":"2023-03-15T20:48:20.000Z","size":17,"stargazers_count":7,"open_issues_count":0,"forks_count":1,"subscribers_count":9,"default_branch":"devel","last_synced_at":"2025-01-09T11:58:10.616Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Bioconductor.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-09-29T10:29:39.000Z","updated_at":"2023-03-15T20:48:25.000Z","dependencies_parsed_at":null,"dependency_job_id":"355ca1b7-f3e0-441a-9cde-e65de8f97b29","html_url":"https://github.com/Bioconductor/IntermediateR","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FIntermediateR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FIntermediateR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FIntermediateR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FIntermediateR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor","download_url":"https://codeload.github.com/Bioconductor/IntermediateR/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240922655,"owners_count":19879143,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-11T11:37:10.748Z","updated_at":"2025-02-26T19:34:55.276Z","avatar_url":"https://github.com/Bioconductor.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# Workshop: Intermediate R Software Development\n\nThis is a series of meetings to enhance our understanding of R as a\nprogramming language, and to connect with other people interested in R\nsoftware development. It is open to members of the Roswell Park and\nSUNY at Buffalo communities. It is suitable for people who already\nknow R, and are eager to develop a deeper understanding of the\nlanguage and 'best practices' when tackling larger projects.\n\nThere are six sessions. Participants are expected to attend all\nsessions. All sessions are 4-6 pm in the Gaylord Cary Meeting Room,\nResearch Studies Center, Roswell Park.\n\nApplications CLOSED.\n\nThe first meeting is Wednesday, 5 October, at 4-6 pm in the Gaylord\nCary Meeting Room, Research Studies Center, Roswell Park.\n\n## Preparation\n\n1. Please bring a laptop with wifi capabilities. Its a 2-hour session\n   so a charged battery should be ok; I'm not sure what the power\n   supply situation will be.\n\n## Schedule (Tentative)\n\nWednesday, 5 October\n\n- Working with packages and github.\n\n- Please install [R][] version 3.3.1, [RStudio][], and [git][].\n\n- Please also install [devtools][].\n   \n        install.packages(\"devtools\")\n\nFriday, 7 October\n\n- Classical, tidy, and rich approaches to data representation and\n  analysis\n\n- For session 2, please install [dplyr][], [data.table][],\n  [reshape2][] [ggplot2][] and [SummarizedExperiment][]\n\n        install.packages(\n            c(\"dplyr\", \"data.table\", \"reshape2\", \"ggplot2\"),\n            repos=\"https://cran.r-project.org\"\n        )\n        source(\"https://bioconductor.org/biocLite.R\")\n        biocLite(\"SummarizedExperiment\")\n\n- Please also download the following plain-text files:\n  [ALL-expression.csv][], [ALL-phenoData.csv][]\n\nWednesday, 12 October\n\n- Understanding classes and methods\n\nFriday, 14 October\n\n- Unit tests and other programming best practices\n\nWednesday, 19 October\n\n- For session 5, please install [microbenchmark][], [memoise][], and\n  optionally [inline][]\n  \n        install.packages(\n            c(\"microbenchmark\", \"memoise\", \"inline\")\n            repos=\"https://cran.r-project.org\"\n        )\n\n- Writing efficient code\n\nFriday, 21 October\n\n- For this session, please install [rmarkdown][] and [shiny][].\n\n- Reports, shiny applications, and interactive communication\n\n[1]: https://www.surveymonkey.com/r/ZHBSZ9H\n\n[R]: https://cran.r-project.org/\n[RStudio]: https://www.rstudio.com/products/rstudio/download3/\n[git]: https://git-scm.com/downloads\n[devtools]: https://cran.r-project.org/package=devtools\n[dplyr]: https://cran.r-project.org/package=dplyr\n[data.table]: https://cran.r-project.org/package=data.table\n[reshape2]: https://cran.r-project.org/package=reshape2\n[ggplot2]: https://cran.r-project.org/package=ggplot2\n[microbenchmark]: https://cran.r-project.org/package=microbenchmark\n[memoise]: https://cran.r-project.org/package=memoise\n[inline]: https://cran.r-project.org/package=inline\n[rmarkdown]: https://cran.r-project.org/package=rmarkdown\n[shiny]: https://cran.r-project.org/package=shiny\n[SummarizedExperiment]: https://bioconductor.org/packages/SummarizedExperiment\n[ALL-expression.csv]: https://github.com/Bioconductor/BiocIntroRPCI/raw/master/inst/extdata/ALL-expression.csv\n[ALL-phenoData.csv]: https://github.com/Bioconductor/BiocIntroRPCI/raw/master/inst/extdata/ALL-phenoData.csv\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioconductor%2Fintermediater","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbioconductor%2Fintermediater","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioconductor%2Fintermediater/lists"}