{"id":19624300,"url":"https://github.com/bioconductor/matrixgenerics","last_synced_at":"2025-04-28T05:31:45.646Z","repository":{"id":40775428,"uuid":"109403514","full_name":"Bioconductor/MatrixGenerics","owner":"Bioconductor","description":"S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects","archived":false,"fork":false,"pushed_at":"2024-04-30T18:12:37.000Z","size":376,"stargazers_count":11,"open_issues_count":6,"forks_count":2,"subscribers_count":14,"default_branch":"devel","last_synced_at":"2024-05-09T07:46:36.667Z","etag":null,"topics":["bioconductor-package","core-package"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/MatrixGenerics","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Bioconductor.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-11-03T14:13:49.000Z","updated_at":"2024-04-30T18:11:36.000Z","dependencies_parsed_at":"2024-10-23T05:24:29.855Z","dependency_job_id":null,"html_url":"https://github.com/Bioconductor/MatrixGenerics","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FMatrixGenerics","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FMatrixGenerics/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FMatrixGenerics/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FMatrixGenerics/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor","download_url":"https://codeload.github.com/Bioconductor/MatrixGenerics/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":224096991,"owners_count":17255200,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor-package","core-package"],"created_at":"2024-11-11T11:37:38.835Z","updated_at":"2024-11-11T11:37:40.719Z","avatar_url":"https://github.com/Bioconductor.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"[\u003cimg src=\"https://www.bioconductor.org/images/logo/jpg/bioconductor_logo_rgb.jpg\" width=\"200\" align=\"right\"/\u003e](https://bioconductor.org/)\n\n**MatrixGenerics** is an R/Bioconductor package that provides the S4 generics for popular row and column aggregation functions for matrices (e.g. `colVars()`, `rowMedians()`). It follows the API developed by the [**matrixStats**](https://cran.r-project.org/package=matrixStats) package. The target audience for **MatrixGenerics** are R package developers that want to write code that can automatically handle different kind of matrix implementations: for example base R `matrix`, the S4 `Matrix` (including sparse representations), and `DelayedMatrix` objects.\n\nA prerequisite to handle these matrix objects is that a package with the corresponding implementation is available. So far, there are six packages:\n\n* [**matrixStats**](https://cran.r-project.org/package=matrixStats) for base R `matrix` objects\n* [**Matrix**](https://cran.r-project.org/package=Matrix) and [**sparseMatrixStats**](https://github.com/const-ae/sparseMatrixStats) for `dgCMatrix` (sparse matrix) objects from the **Matrix** package\n* [**SparseArray**](https://bioconductor.org/packages/SparseArray) for `SVT_SparseMatrix` objects from the same package\n* [**DelayedArray**](https://bioconductor.org/packages/DelayedArray) and [**DelayedMatrixStats**](https://bioconductor.org/packages/DelayedMatrixStats) for `DelayedMatrix` objects from the **DelayedArray** package.\n\nThis package imports **matrixStats** and automatically forwards all function calls on `matrix`, `array`, or `numeric` objects to **matrixStats**. To handle other matrix-like objects, the user must manually install the package that implements row and column aggregation methods for those objects (e.g. the **sparseMatrixStats**, **SparseArray**, **DelayedArray**, or **DelayedMatrixStats** package).\n\nSee https://bioconductor.org/packages/MatrixGenerics for more information including how to install the release version of the package (please refrain from installing directly from GitHub).\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioconductor%2Fmatrixgenerics","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbioconductor%2Fmatrixgenerics","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioconductor%2Fmatrixgenerics/lists"}