{"id":19624029,"url":"https://github.com/bioconductor/pkgrevdocs","last_synced_at":"2025-11-21T09:04:46.440Z","repository":{"id":39584675,"uuid":"349158982","full_name":"Bioconductor/pkgrevdocs","owner":"Bioconductor","description":"Training Material for Community Reviewers","archived":false,"fork":false,"pushed_at":"2025-02-19T15:28:14.000Z","size":2551,"stargazers_count":8,"open_issues_count":10,"forks_count":19,"subscribers_count":12,"default_branch":"devel","last_synced_at":"2025-02-19T16:31:00.242Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://contributions.bioconductor.org/","language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Bioconductor.png","metadata":{"files":{"readme":"README.md","changelog":"news-file.Rmd","contributing":null,"funding":null,"license":"license-file.Rmd","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"citation-file.Rmd","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-03-18T17:19:09.000Z","updated_at":"2025-02-19T15:26:15.000Z","dependencies_parsed_at":"2024-11-11T11:38:27.394Z","dependency_job_id":"a8af68e4-678b-4c81-af53-e2e4b0b13c49","html_url":"https://github.com/Bioconductor/pkgrevdocs","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Fpkgrevdocs","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Fpkgrevdocs/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Fpkgrevdocs/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Fpkgrevdocs/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor","download_url":"https://codeload.github.com/Bioconductor/pkgrevdocs/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240922303,"owners_count":19879088,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-11T11:36:34.922Z","updated_at":"2025-11-21T09:04:46.428Z","avatar_url":"https://github.com/Bioconductor.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"Bioconductor Packages: Guidelines for Developers and Reviewers\n==============================================================\n\n[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) \n[![GitHub Actions](https://github.com/Bioconductor/pkgrevdocs/workflows/build_deploy/badge.svg)](https://github.com/Bioconductor/pkgrevdocs/actions)\n\n[_Bioconductor_](https://bioconductor.org/)'s guide for package development, maintenance, and peer review.\n[Read it here](https://bioconductor.github.io/pkgrevdocs/).\n\n## Contributing\n\n### Suggestions and updates\n\nThis book contains our guidelines for packages contributed to the [_Bioconductor_](https://bioconductor.org/) suite of packages.\nThese guidelines are always a work in progress - corrections, suggestions and general improvements are welcome as [issue submissions in this repository](https://github.com/Bioconductor/pkgrevdocs/issues/new).\nOpen discussions are welcome in our [Zulip](https://community-bioc.zulipchat.com/).\nYou can also suggest changes by editing the `.Rmd` files that are at the root of this repository and submitting a [pull request](https://github.com/Bioconductor/pkgrevdocs/pulls).\nAn \"Edit this page\" link in the side bar on the right of each book chapter will take you directly to the relevant page on the GitHub repository to make such changes.\nPlease target your pull requests to the `devel` branch.\n\n### Technical details\n\nDeployment is done via [GitHub Actions](https://github.com/Bioconductor/pkgrevdocs/actions):\n\n* whenever there's a push to `devel`, the book is built and its content is then pushed to the `gh-pages` branch.\n\nTo preview the book locally - preferably before opening a pull request and while reviewing it - use the following code in an R console with the working directory set to the root of this repository, making sure that all the dependencies of the book are available (see file `DESCRIPTION`).\n\n```r\nbookdown::render_book()\n```\n\n## Original sources\n\nThis book is based on contents from the following original sources:\n\n- https://bioconductor.org\n- https://bioconductor.org/developers/package-guidelines/\n\nThe template used for this book is credited to the book _rOpenSci Packages: Development, Maintenance, and Peer Review_:\n\n- https://devguide.ropensci.org/ (deployed book)\n- https://github.com/ropensci/dev_guide (source)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioconductor%2Fpkgrevdocs","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbioconductor%2Fpkgrevdocs","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbioconductor%2Fpkgrevdocs/lists"}