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is a collaborative project to facilitate the interconversion of life science data from one format to another.\n\n.. image:: https://badge.fury.io/py/bioconvert.svg\n    :target: https://pypi.python.org/pypi/bioconvert\n\n.. image:: https://github.com/bioconvert/bioconvert/actions/workflows/main.yml/badge.svg?branch=main\n    :target: https://github.com/bioconvert/bioconvert/actions/workflows/main.yml\n\n.. image:: https://coveralls.io/repos/github/bioconvert/bioconvert/badge.svg?branch=main\n   :target: https://coveralls.io/github/bioconvert/bioconvert?branch=main\n\n.. image:: http://readthedocs.org/projects/bioconvert/badge/?version=main\n    :target: http://bioconvert.readthedocs.org/en/main/?badge=main\n    :alt: Documentation Status\n\n.. image::  https://img.shields.io/github/issues/bioconvert/bioconvert.svg\n    :target:  https://github.com/bioconvert/bioconvert/issues\n\n.. image:: https://anaconda.org/bioconda/bioconvert/badges/platforms.svg\n   :target: https://anaconda.org/bioconda/bioconvert/badges/platforms.svg\n\n.. image::  https://anaconda.org/bioconda/bioconvert/badges/version.svg\n    :target: https://anaconda.org/bioconda/bioconvert\n\n.. image:: https://anaconda.org/bioconda/bioconvert/badges/downloads.svg\n    :target: https://github.com/bioconvert/bioconvert/releases\n\n.. image:: https://zenodo.org/badge/106598809.svg\n   :target: https://zenodo.org/badge/latestdoi/106598809\n\n.. image:: https://static.pepy.tech/personalized-badge/bioconvert?period=month\u0026units=international_system\u0026left_color=black\u0026right_color=blue\u0026left_text=Downloads/months\n    :target: https://pepy.tech/project/bioconvert\n\n.. image:: https://raw.githubusercontent.com/bioconvert/bioconvert/main/doc/_static/logo_300x200.png\n    :target: https://raw.githubusercontent.com/bioconvert/bioconvert/main/doc/_static/logo_300x200.png\n\n\n:contributions: Want to add a convertor ? Please join https://github.com/bioconvert/bioconvert/issues/1\n:How to cite: Caro et al, BioConvert: a comprehensive format converter for life sciences (2023) NAR Genomics and Bioinformatics (5),3. https://doi.org/10.1093/nargab/lqad074\n\nOverview\n########\n\n\nLife science uses many different formats. They may be old, or with complex syntax and converting those formats may be a challenge. Bioconvert aims at providing a common tool / interface to convert life science data formats from one to another.\n\nMany conversion tools already exist but they may be dispersed, focused on few specific formats, difficult to install, or not optimised. With Bioconvert, we plan to cover a wide spectrum of format conversions; we will re-use existing tools when possible and provide facilities to compare different conversion tools or methods via benchmarking. New implementations are provided when considered better than existing ones.\n\nIn Jan 2023, we had 50 formats, 100 direct conversions available.\n\n.. image:: https://raw.githubusercontent.com/bioconvert/bioconvert/main/doc/conversion.png\n    :width: 80%\n\n\nInstallation\n###############\n\n**BioConvert** is developped in Python. Please use conda or any Python environment manager to install **BioConvert** using the **pip** command::\n\n    pip install bioconvert\n\n50% of the conversions should work out of the box. However, many conversions require external tools. This is why we\nrecommend to use a **conda** environment. In particular, most external tools are available on the **bioconda** channel. \nFor instance if you want to convert a SAM file to a BAM file you would need to install **samtools** as follow::\n\n    conda install -c bioconda samtools\n\nSince **bioconvert** is available on `bioconda \u003chttps://bioconda.github.io\u003e`_ on solution that installs **BioConvert** and all its dependencies is to use conda/mamba::\n\n    conda env create --name bioconvert mamba\n    conda activate bioconvert\n    mamba install bioconvert\n    bioconvert --help\n\nSee the Installation section for more details and alternative solutions (docker, singularity).\n\nQuick Start\n##############\nThere are many conversions available. Type::\n\n    bioconvert --help \n\nto get a list of valid method of conversions. Taking the example of a conversion from a `FastQ` file into\na `FastA` file, you could do the conversion as follows::\n\n    bioconvert fastq2fasta input.fastq output.fasta\n    bioconvert fastq2fasta input.fq    output.fasta\n    bioconvert fastq2fasta input.fq.gz output.fasta.gz\n    bioconvert fastq2fasta input.fq.gz output.fasta.bz2\n\nWhen there is no ambiguity, you can be implicit::\n\n     bioconvert input.fastq output.fasta\n\nThe default method of conversion is used but you may use another one. Checkout the available methods with::\n\n    bioconvert fastq2fasta --show-methods\n\nFor more help about a conversion, just type::\n\n    bioconvert fastq2fasta --help\n\nand more generally::\n\n    bioconvert --help\n\n\nYou may also call **BioConvert** from a Python shell::\n\n    # import a converter\n    from bioconvert.fastq2fasta import FASTQ2FASTA\n\n    # Instanciate with infile/outfile names\n    convert = FASTQ2FASTA(infile, outfile)\n\n    # the conversion itself:\n    convert()\n\n\nAvailable Converters\n#######################\n\n\n.. list-table:: Conversion table\n    :widths: 20 40 40\n    :header-rows: 1\n\n    * - Converters\n      - CI testing\n      - Default method\n    * - `abi2fasta \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.abi2fasta\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/abi2fasta.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/abi2fasta.yml\n      - 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.. image:: https://github.com/bioconvert/bioconvert/actions/workflows/clustal2phylip.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/clustal2phylip.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `clustal2stockholm \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.clustal2stockholm\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/clustal2stockholm.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/clustal2stockholm.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `cram2bam \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.cram2bam\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/cram2bam.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/cram2bam.yml\n      - `SAMTOOLS \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `cram2fasta \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.cram2fasta\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/cram2fasta.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/cram2fasta.yml\n      - `SAMTOOLS \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `cram2fastq \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.cram2fastq\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/cram2fastq.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/cram2fastq.yml\n      - `SAMTOOLS \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `cram2sam \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.cram2sam\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/cram2sam.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/cram2sam.yml\n      - `SAMTOOLS \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `csv2tsv \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.csv2tsv\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/csv2tsv.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/csv2tsv.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `csv2xls \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.csv2xls\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/csv2xls.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/csv2xls.yml\n      - Pandas\n    * - `dsrc2gz \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.dsrc2gz\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/dsrc2gz.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/dsrc2gz.yml\n      - DSRC software\n    * - `embl2fasta \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.embl2fasta\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/embl2fasta.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/embl2fasta.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `embl2genbank \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.embl2genbank\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/embl2genbank.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/embl2genbank.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fasta2clustal \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fasta2clustal\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2clustal.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2clustal.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fasta2faa \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fasta2faa\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2faa.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2faa.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fasta2fasta_agp \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fasta2fasta_agp\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2fasta_agp.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2fasta_agp.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fasta2fastq \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fasta2fastq\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2fastq.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2fastq.yml\n      - `PYSAM \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fasta2genbank \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fasta2genbank\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2genbank.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2genbank.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fasta2nexus \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fasta2nexus\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2nexus.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2nexus.yml\n      - `GOALIGN \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fasta2phylip \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fasta2phylip\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2phylip.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2phylip.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fasta2twobit \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fasta2twobit\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2twobit.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fasta2twobit.yml\n      - `UCSC \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fasta_qual2fastq \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fasta_qual2fastq\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fasta_qual2fastq.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fasta_qual2fastq.yml\n      - `PYSAM \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fastq2fasta \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fastq2fasta\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fastq2fasta.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fastq2fasta.yml\n      -  `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_  `available \u003c_static/benchmark_fastq2fasta.png\u003e`_\n    * - `fastq2fasta_qual \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fastq2fasta_qual\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fastq2fasta_qual.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fastq2fasta_qual.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `fastq2qual \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.fastq2qual\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/fastq2qual.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/fastq2qual.yml\n      - `READFQ \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `genbank2embl \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.genbank2embl\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/genbank2embl.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/genbank2embl.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `genbank2fasta \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.genbank2fasta\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/genbank2fasta.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/genbank2fasta.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `genbank2gff3 \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.genbank2gff3\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/genbank2gff3.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/genbank2gff3.yml\n      - `BIOCODE \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `gfa2fasta \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.gfa2fasta\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/gfa2fasta.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/gfa2fasta.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `gff22gff3 \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.gff22gff3\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/gff22gff3.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/gff22gff3.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `gff32gff2 \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.gff32gff2\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/gff32gff2.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/gff32gff2.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `gff32gtf \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.gff32gtf\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/gff32gtf.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/gff32gtf.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `gz2bz2 \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.gz2bz2\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/gz2bz2.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/gz2bz2.yml\n      - pigz/pbzip2 software\n    * - `gz2dsrc \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.gz2dsrc\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/gz2dsrc.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/gz2dsrc.yml\n      - DSRC software\n    * - `json2yaml \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.json2yaml\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/json2yaml.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/json2yaml.yml\n      - Python\n    * - `maf2sam \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.maf2sam\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/maf2sam.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/maf2sam.yml\n      - `BIOCONVERT \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `newick2nexus \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.newick2nexus\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/newick2nexus.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/newick2nexus.yml\n      - `GOTREE \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `newick2phyloxml \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.newick2phyloxml\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/newick2phyloxml.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/newick2phyloxml.yml\n      - `GOTREE \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `nexus2clustal \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.nexus2clustal\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2clustal.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2clustal.yml\n      - `GOALIGN \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `nexus2fasta \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.nexus2fasta\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2fasta.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2fasta.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `nexus2newick \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.nexus2newick\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2newick.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2newick.yml\n      - `GOTREE \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `nexus2phylip \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.nexus2phylip\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2phylip.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2phylip.yml\n      - `GOALIGN \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `nexus2phyloxml \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.nexus2phyloxml\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2phyloxml.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/nexus2phyloxml.yml\n      - `GOTREE \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `ods2csv \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.ods2csv\u003e`_\n      - 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`phylip2fasta \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.phylip2fasta\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/phylip2fasta.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/phylip2fasta.yml\n      - `BIOPYTHON \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `phylip2nexus \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.phylip2nexus\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/phylip2nexus.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/phylip2nexus.yml\n      - `GOALIGN \u003chttps://bioconvert.readthedocs.io/en/main/bibliography.html\u003e`_\n    * - `phylip2stockholm \u003chttps://bioconvert.readthedocs.io/en/main/ref_converters.html#module-bioconvert.phylip2stockholm\u003e`_\n      - .. image:: https://github.com/bioconvert/bioconvert/actions/workflows/phylip2stockholm.yml/badge.svg\n            :target: https://github.com/bioconvert/bioconvert/actions/workflows/phylip2stockholm.yml\n      - 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