{"id":21962533,"url":"https://github.com/biocpy/biocworkshop2024","last_synced_at":"2026-05-13T07:04:38.829Z","repository":{"id":243169130,"uuid":"810363330","full_name":"BiocPy/BiocWorkshop2024","owner":"BiocPy","description":null,"archived":false,"fork":false,"pushed_at":"2024-07-24T03:52:15.000Z","size":8777,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-01-28T00:35:36.570Z","etag":null,"topics":["bioconductor","biocpy","rpython"],"latest_commit_sha":null,"homepage":"https://biocpy.github.io/BiocWorkshop2024/","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BiocPy.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-06-04T14:47:54.000Z","updated_at":"2024-07-24T03:45:21.000Z","dependencies_parsed_at":"2024-06-07T05:25:16.422Z","dependency_job_id":"b0d54ed5-ba77-42b7-80cf-c34e58cbb296","html_url":"https://github.com/BiocPy/BiocWorkshop2024","commit_stats":null,"previous_names":["biocpy/biocworkshop2024"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiocPy%2FBiocWorkshop2024","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiocPy%2FBiocWorkshop2024/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiocPy%2FBiocWorkshop2024/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiocPy%2FBiocWorkshop2024/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BiocPy","download_url":"https://codeload.github.com/BiocPy/BiocWorkshop2024/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245020314,"owners_count":20548156,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","biocpy","rpython"],"created_at":"2024-11-29T10:43:17.521Z","updated_at":"2026-05-13T07:04:38.405Z","avatar_url":"https://github.com/BiocPy.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Bioc 2024 workshop tutorial\n\nThis is a reproducible Quarto book with reusable snippets. If you're new to Quarto books, you can explore more about them [here](https://quarto.org/docs/books). \n\n## Setting Up the Tutorial Locally\n\nTo get started locally, follow these steps:\n\n- Install [quarto-cli](https://quarto.org/docs/get-started/).\n- Install the necessary packages listed in [requirements.txt](./requirements.txt) and [rpackages.R](rpackages.R).\n\n```sh\npip install -r requirements.txt\nRscript rpackages.R\n```\n\n- Run quarto preview to view the HTML version of the site.\n\n```sh\nqurto preview\n```\n\nGitHub actions automatically publish the tutorial book whenever changes are made on the **master** branch.\n\n## Dockerfile\n\nTo build the docker image, (defaults to port 8889)\n\n```sh\ndocker build -t bioc .\ndocker run -it -p 8889:8889 bioc\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiocpy%2Fbiocworkshop2024","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiocpy%2Fbiocworkshop2024","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiocpy%2Fbiocworkshop2024/lists"}