{"id":25527364,"url":"https://github.com/biocpy/environments","last_synced_at":"2026-02-19T17:02:16.532Z","repository":{"id":274072998,"uuid":"921796600","full_name":"BiocPy/environments","owner":"BiocPy","description":"Conda configurations for managing BiocPy releases","archived":false,"fork":false,"pushed_at":"2025-01-24T21:40:04.000Z","size":3,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-10-12T21:50:11.622Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Dockerfile","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BiocPy.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-01-24T16:25:51.000Z","updated_at":"2025-01-24T21:40:07.000Z","dependencies_parsed_at":"2025-05-22T02:07:40.982Z","dependency_job_id":"edc0e5ff-b8ee-405c-bfa6-5f02ab132626","html_url":"https://github.com/BiocPy/environments","commit_stats":null,"previous_names":["biocpy/environments"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/BiocPy/environments","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiocPy%2Fenvironments","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiocPy%2Fenvironments/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiocPy%2Fenvironments/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiocPy%2Fenvironments/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BiocPy","download_url":"https://codeload.github.com/BiocPy/environments/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiocPy%2Fenvironments/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29623546,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-19T13:04:20.082Z","status":"ssl_error","status_checked_at":"2026-02-19T13:03:33.775Z","response_time":117,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-02-19T22:18:19.070Z","updated_at":"2026-02-19T17:02:11.523Z","avatar_url":"https://github.com/BiocPy.png","language":"Dockerfile","readme":"# BiocPy Environments\n\nThis repository provides Conda/Mamba configuration files and Dockerfiles to simplify the creation of environments containing most Python packages in the BiocPy (\u0026 friends) ecosystem. These provide easy setup for users looking to use the BiocPy tools.\n\nIn addition, pre-built Docker images for these configurations are published to the [GitHub Package Registry](https://github.com/orgs/BiocPy/packages?repo_name=environments).\n\n---\n\n## Getting Started\n\n### Using Conda or Mamba\n\nTo create an environment using one of the configuration YAML files:\n\n```shell\n# Use conda or mamba to create the environment\nconda env create -f envs/release.yml\n\n# Activate the environment\nconda activate biocpy_release\n\n# Check the versions of the installed packages\npip list\n```\n\n\u003e **Note**: If you have multiple Conda channels enabled, you may need to set the channel priority for reliable package resolution:\n\u003e\n\u003e ```sh\n\u003e conda config --set channel_priority flexible\n\u003e ```\n\n---\n\n### Using Docker\n\nTo create and use a Docker image based on the provided Dockerfile:\n\n```sh\n# Build the Docker image\ndocker build -f release.dockerfile -t biocpy_release\n\n# Run the Docker container\ndocker run -it biocpy_release\n```\n\n---\n\n## Available Configurations\n\n### Conda Configurations\n\n- `envs/release.yml`: Contains the stable release versions of BiocPy and related packages.\n\n### Docker Images\n\nPre-built Docker images are available in the [GitHub Package Registry](https://github.com/orgs/BiocPy/packages?repo_name=environments). These images correspond to the provided Conda configurations:\n\n- `biocpy/release`: Based on `release.yml`\n\nYou can pull these images directly:\n\n```sh\n## Replace the VERSION tag with an available version from the registry\n\n# Pull the stable release image\ndocker pull ghcr.io/biocpy/environments/release:\u003cVERSION\u003e\n```\n\n\u003e **Note**: We might expand this to include both dev and release configurations of the packages. In that case:\n\u003e `envs/dev.yml`: Includes the latest development versions of BiocPy packages for testing and contributions\n\u003e `biocpy/dev`: Docker image based on `dev.yml`\n\n---\n\n## Support\n\nIf you encounter issues or have questions, please open an issue in this repository or reach out via the [BiocPy GitHub Discussions](https://github.com/biocpy/biocpy/discussions).\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiocpy%2Fenvironments","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiocpy%2Fenvironments","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiocpy%2Fenvironments/lists"}