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This package provide the `SpatialFeatureExperiment` class, based on the [R package and class](https://github.com/pachterlab/SpatialFeatureExperiment).\n\n## Install\n\nTo get started, install the package from [PyPI](https://pypi.org/project/SpatialFeatureExperiment/)\n\n```bash\npip install spatialfeatureexperiment\n```\n\n## Quick Usage\n\nThis package uses shapely and geopandas to support the `*_geometries` slots.\n\n```python\nfrom spatialexperiment import SpatialFeatureExperiment\nimport numpy as np\nimport geopandas as gpd\nfrom shapely.geometry import Polygon\n\nnrows = 200\nncols = 500\ncounts = np.random.rand(nrows, ncols)\npolys = gpd.GeoSeries(\n    [\n        Polygon([(1, -1), (1, 0), (0, 0)]),\n        Polygon([(3, -1), (4, 0), (3, 1)]),\n    ]\n)\n\ncolgeoms = {\"polygons\" : gpd.GeoDataFrame({\"geometry\": polys})}\ntspe = SpatialFeatureExperiment(assays={\"spots\": counts}, col_geometries=colgeoms)\n```\n\n\u003c!-- biocsetup-notes --\u003e\n\n## Note\n\nThis project has been set up using [BiocSetup](https://github.com/biocpy/biocsetup)\nand [PyScaffold](https://pyscaffold.org/).\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiocpy%2Fspatialfeatureexperiment","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiocpy%2Fspatialfeatureexperiment","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiocpy%2Fspatialfeatureexperiment/lists"}