{"id":17138312,"url":"https://github.com/biodranik/bibutils","last_synced_at":"2025-03-24T07:19:28.536Z","repository":{"id":77204316,"uuid":"190875926","full_name":"biodranik/bibutils","owner":"biodranik","description":"A fixed fork of bibutils from sourceforge to process pubmed PMC medline nbib files and convert them into Word Source.xml bibliography file","archived":false,"fork":false,"pushed_at":"2019-06-08T10:42:14.000Z","size":582,"stargazers_count":3,"open_issues_count":0,"forks_count":1,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-01-29T12:47:24.311Z","etag":null,"topics":["bibliography","convert","medline","microsoft-office","nbib","pmc","pubmed","sources-xml","word"],"latest_commit_sha":null,"homepage":null,"language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/biodranik.png","metadata":{"files":{"readme":"readme.txt","changelog":"ChangeLog","contributing":null,"funding":null,"license":"Copying","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-06-08T10:41:53.000Z","updated_at":"2020-04-14T08:54:39.000Z","dependencies_parsed_at":null,"dependency_job_id":"5ff1c868-db44-4d2a-bc65-4e6f7d87c9b8","html_url":"https://github.com/biodranik/bibutils","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biodranik%2Fbibutils","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biodranik%2Fbibutils/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biodranik%2Fbibutils/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biodranik%2Fbibutils/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/biodranik","download_url":"https://codeload.github.com/biodranik/bibutils/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245224601,"owners_count":20580370,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bibliography","convert","medline","microsoft-office","nbib","pmc","pubmed","sources-xml","word"],"created_at":"2024-10-14T20:09:18.116Z","updated_at":"2025-03-24T07:19:28.510Z","avatar_url":"https://github.com/biodranik.png","language":"C","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n                              COMPILING BIBUTILS.\n\n------------------------------------------------------------------------\nSTEP 1.  Configure the makefile by running the configure script.\n\nThe configure script attempts to auto-identify your operating system\nand does a reasonable job for a number of platforms (including x86 Linux,\nversions of MacOSX, some BSDs, Sun Solaris, and SGI IRIX).  It's not a \nfull-fledged configure script via the autoconf system, but is more than \nsufficient for Bibutils.\n\nUnlike a lot of programs, Bibutils is written in very vanilla ANSI C\nwith no external dependencies (other than the core C libraries themselves),\nso the biggest difference between platforms is generally how they\nhandle library generation.  If your platform is not recognized, please\ne-mail me the output of 'uname -a' and I'll work on adding it.\n\nTo configure the makefile, simply run:\n\n% configure\n\nor alternatively\n\n% sh -f configure\n\nThe output should look something like:\n\n'\n'Bibutils Configuration\n'----------------------\n'\n'Operating system:               Linux_x86_64\n'Library and binary type:        static\n'Binary installation directory:  /usr/local/bin\n'Library installation directory: /usr/local/lib\n'\n' - If auto-identification of operating system failed, e-mail cdputnam@ucsd.edu\n'   with the output of the command: uname -a\n'\n' - Use --static or --dynamic to specify library and binary type;\n'   the --static option is the default\n'\n' - Set binary installation directory with:  --install-dir DIR\n'\n' - Set library installation directory with: --install-lib DIR\n'\n'\n'To compile,                  type: make\n'To install,                  type: make install\n'To make tgz package,         type: make package\n'To make deb package,         type: make deb\n'\n'To clean up temporary files, type: make clean\n'To clean up all files,       type: make realclean\n\n\nBy default, the configure script generates Makefiles to generate statically\nlinked binaries.  These binaries are the largest, but require no management of\ndynamic libraries, which can be subtle for users not used to installing\nthem and ensuring that the operating system knows where they are.\nDynamically linked binaries take up substantially less disk space, but require\nreal machine and distribution specific knowledge for handling the dynamic\nlibrary installation and usage.  All of the distributed binaries are statically\nlinked for obvious reasons.\n\n-----------------------------------------------------------------------\nSTEP 2.  Make the package with make\n\n% make\n\n----------------------------------------------------------------------\nSTEP 3.  Install the package\n\n% make install\n\nNote that 'make install' won't install the libraries with statically-\nlinked binaries but will (naturally) with dynamically-linked binaries.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiodranik%2Fbibutils","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiodranik%2Fbibutils","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiodranik%2Fbibutils/lists"}