{"id":21023864,"url":"https://github.com/biogenies/countfitter","last_synced_at":"2025-05-15T08:33:01.942Z","repository":{"id":56936010,"uuid":"136907148","full_name":"BioGenies/countfitteR","owner":"BioGenies","description":null,"archived":false,"fork":false,"pushed_at":"2025-04-01T18:40:10.000Z","size":4439,"stargazers_count":4,"open_issues_count":0,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-05-10T03:08:55.608Z","etag":null,"topics":["cancer","cancer-imaging-research","count-data","count-distribution","foci"],"latest_commit_sha":null,"homepage":"http://biongram.biotech.uni.wroc.pl/countfitter/","language":"CSS","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BioGenies.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-06-11T09:52:59.000Z","updated_at":"2025-04-01T18:40:14.000Z","dependencies_parsed_at":"2024-11-19T23:15:21.598Z","dependency_job_id":null,"html_url":"https://github.com/BioGenies/countfitteR","commit_stats":{"total_commits":274,"total_committers":8,"mean_commits":34.25,"dds":"0.45985401459854014","last_synced_commit":"28992392a8d949a3beeea13a4cf274eda927e67f"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioGenies%2FcountfitteR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioGenies%2FcountfitteR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioGenies%2FcountfitteR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioGenies%2FcountfitteR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioGenies","download_url":"https://codeload.github.com/BioGenies/countfitteR/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254304688,"owners_count":22048448,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cancer","cancer-imaging-research","count-data","count-distribution","foci"],"created_at":"2024-11-19T11:20:30.897Z","updated_at":"2025-05-15T08:32:58.734Z","avatar_url":"https://github.com/BioGenies.png","language":"CSS","funding_links":[],"categories":[],"sub_categories":[],"readme":"  \u003c!-- badges: start --\u003e\n[![published in: Annals of Translational Medicine](https://img.shields.io/badge/published%20in-ATM-green.svg)](https://atm.amegroups.com/article/view/63994)\n[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/countfitteR)](https://cran.r-project.org/package=countfitteR)\n[![Downloads](http://cranlogs.r-pkg.org/badges/countfitteR)](https://cran.r-project.org/package=countfitteR)\n![pkgdown](https://github.com/BioGenies/countfitteR/workflows/pkgdown/badge.svg)\n![check](https://github.com/BioGenies/countfitteR/workflows/check/badge.svg)\n[![R build status](https://github.com/BioGenies/countfitteR/workflows/R-CMD-check/badge.svg)](https://github.com/BioGenies/countfitteR/actions)\n  \u003c!-- badges: end --\u003e\n\n# countfitteR\n\ncountfitteR is a web server based on Shiny technology for selecting the most appropriate count distribution in provided data sets. \n\nThe functions of countfitteR can also be accessed through our [web server](http://biongram.biotech.uni.wroc.pl/countfitter/) or via the R console for customized analysis pipelines.\n\n## Installation\n\n*countfitteR* is available on [CRAN](https://cran.r-project.org/package=countfitteR). \n\n```R\ninstall.packages(\"countfitteR\")\n```\n\nHowever, you can also install the developmental version of countfitteR directly from GitHub\n\n```R\ndevtools::install_github(\"BioGenies/countfitteR\")\n```\n\n## Run countfitteR\n\nTo run countfitteR type the following command into an R console.\n\n```R\ncountfitteR::countfitteR_gui()\n```\n\n## How to cite\n\n- Chilimoniuk, J., Gosiewska, A., Słowik, J., Weiss, R., Deckert, P.M., Rödiger, S., and Burdukiewicz, M. (2021). countfitteR: efficient selection of count distributions to assess DNA damage. Annals of Translational Medicine.\n- Chilimoniuk, J., Gosiewska, A., Słowik, J., Weiss, R., Deckert, P.M., Rödiger, S., Burdukiewicz, M., (2021). countfitteR: efficient selection of count distributions to assess DNA damage. *Annals of Translational Medicine*. https://doi.org/10.21037/atm-20-6363\n\n\n```tex\n@Article{,\n  author = \"Jarosław Chilimoniuk and Alicja Gosiewska and Jadwiga Słowik and Romano Weiss and P. Markus Deckert and Stefan Rödiger and Michał Burdukiewicz\",\n  title = \"countfitteR: efficient selection of count distributions to assess DNA damage\",\n  year = 2021, \n  issn = {2305-5847},\n  journal = \"Annals of Translational Medicine\",\n  url = \"https://atm.amegroups.com/article/view/63994\",\n}\n\n@article{chilimoniuk_countfitter_2021,\n\ttitle = {{countfitteR}: efficient selection of count distributions to assess {DNA} damage},\n\tvolume = {0},\n\tissn = {2305-5847, 2305-5839},\n\tshorttitle = {{countfitteR}},\n\turl = {https://atm.amegroups.com/article/view/63994},\n\tdoi = {10.21037/atm-20-6363},\n\tabstract = {countfitteR: efficient selection of count distributions to assess DNA damage},\n\tlanguage = {en},\n\tnumber = {0},\n\turldate = {2021-03-15},\n\tjournal = {Annals of Translational Medicine},\n\tauthor = {Chilimoniuk, Jarosław and Gosiewska, Alicja and Słowik, Jadwiga and Weiss, Romano and Deckert, P. Markus and Rödiger, Stefan and Burdukiewicz, Michał},\n\tmonth = mar,\n\tyear = {2021},\n\tnote = {Number: 0\nPublisher: AME Publishing Company}\n}\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiogenies%2Fcountfitter","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiogenies%2Fcountfitter","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiogenies%2Fcountfitter/lists"}