{"id":22619770,"url":"https://github.com/biojulia/biofmtspecimens","last_synced_at":"2025-04-15T22:23:08.989Z","repository":{"id":20149205,"uuid":"23419605","full_name":"BioJulia/BioFmtSpecimens","owner":"BioJulia","description":"A collection of bioinformatics file format specimens to test against","archived":false,"fork":false,"pushed_at":"2020-01-07T21:45:49.000Z","size":4213,"stargazers_count":47,"open_issues_count":6,"forks_count":10,"subscribers_count":9,"default_branch":"master","last_synced_at":"2025-04-15T22:22:59.762Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Roff","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BioJulia.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-08-28T07:42:50.000Z","updated_at":"2025-01-23T03:48:06.000Z","dependencies_parsed_at":"2022-08-30T23:30:35.971Z","dependency_job_id":null,"html_url":"https://github.com/BioJulia/BioFmtSpecimens","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FBioFmtSpecimens","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FBioFmtSpecimens/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FBioFmtSpecimens/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FBioFmtSpecimens/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia","download_url":"https://codeload.github.com/BioJulia/BioFmtSpecimens/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":249162102,"owners_count":21222605,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-08T22:08:29.256Z","updated_at":"2025-04-15T22:23:08.972Z","avatar_url":"https://github.com/BioJulia.png","language":"Roff","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n# Bioinformatics Format Specimens\n\nBioinformatics is rife with formats and parsers for those formats. These parsers\ndon't always agree on the definitions of these formats, since many lack any sort\nof formal standard.\n\nThis repository aims to consolidate a collection of format specimens to create a\nunified set of data with which to test software against. Testing against the\nsame cases is a first step towards agreeing on the details and edge cases of a\nformat.\n\n\n# Organization\n\nThis repository consists of a directory for every major format. Directories\ncontain format specimens along with a file `index.yml`. This is a\n[YAML](http://www.yaml.org/) document containing an entry for every specimen in\nthe directory. Each entry has the following fields:\n\n  * **filename** Specimen filename.\n  * **valid** True or false, annotating whether the example is considered to\n    conform to the format.\n  * **origin** The contributor or source from which a specimen was taken.\n  * **tags** Zero or more words used to group specimens by shared features.\n  * **comments** (Optional) Any additional information that might be of\n    interest.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiojulia%2Fbiofmtspecimens","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiojulia%2Fbiofmtspecimens","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiojulia%2Fbiofmtspecimens/lists"}