{"id":32207507,"url":"https://github.com/biometris/statgenibd","last_synced_at":"2026-02-19T09:02:10.450Z","repository":{"id":54598478,"uuid":"393325500","full_name":"Biometris/statgenIBD","owner":"Biometris","description":"See https://biometris.github.io/statgenIBD for a full description ","archived":false,"fork":false,"pushed_at":"2025-07-08T12:22:13.000Z","size":12915,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":3,"default_branch":"main","last_synced_at":"2026-01-26T14:56:13.155Z","etag":null,"topics":["cran","genetics","hmm","ibd","r-package"],"latest_commit_sha":null,"homepage":"https://biometris.github.io/statgenIBD","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Biometris.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2021-08-06T09:23:15.000Z","updated_at":"2025-07-01T06:21:04.000Z","dependencies_parsed_at":"2024-12-19T14:48:12.045Z","dependency_job_id":"8be666cf-c6c1-47a7-bd4c-bb340a95e4fd","html_url":"https://github.com/Biometris/statgenIBD","commit_stats":{"total_commits":219,"total_committers":3,"mean_commits":73.0,"dds":0.045662100456621,"last_synced_commit":"12dd340542bee14a7abb8c2a5bbbd21e02d217e8"},"previous_names":[],"tags_count":8,"template":false,"template_full_name":null,"purl":"pkg:github/Biometris/statgenIBD","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Biometris%2FstatgenIBD","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Biometris%2FstatgenIBD/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Biometris%2FstatgenIBD/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Biometris%2FstatgenIBD/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Biometris","download_url":"https://codeload.github.com/Biometris/statgenIBD/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Biometris%2FstatgenIBD/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29609524,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-19T06:47:36.664Z","status":"ssl_error","status_checked_at":"2026-02-19T06:45:47.551Z","response_time":117,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cran","genetics","hmm","ibd","r-package"],"created_at":"2025-10-22T05:54:12.330Z","updated_at":"2026-02-19T09:02:10.445Z","avatar_url":"https://github.com/Biometris.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\r\noutput: github_document\r\n---\r\n\r\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\r\n\r\n```{r, include = FALSE}\r\nknitr::opts_chunk$set(\r\n  collapse = TRUE,\r\n  comment = \"#\u003e\",\r\n  fig.path = \"man/figures/README-\",\r\n  out.width = \"100%\"\r\n)\r\n```\r\n\r\n# statgenIBD \u003cimg src=\"man/figures/logo.png\" align=\"right\" height=\"139\" alt=\"\" /\u003e\r\n\r\n[![](https://www.r-pkg.org/badges/version/statgenIBD)](https://www.r-pkg.org/pkg/statgenIBD)\r\n[![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/statgenIBD)](https://www.r-pkg.org/pkg/statgenIBD)\r\n[![R-CMD-check](https://github.com/Biometris/statgenIBD/workflows/R-CMD-check/badge.svg)](https://github.com/Biometris/statgenIBD/actions?workflow=R-CMD-check)\r\n[![codecov](https://codecov.io/gh/Biometris/statgenIBD/branch/main/graph/badge.svg)](https://app.codecov.io/gh/Biometris/statgenIBD)\r\n[![DOI](https://zenodo.org/badge/393325500.svg)](https://doi.org/10.5281/zenodo.14810487)\r\n\r\n**statgenIBD** is an R package for calculating Identity By Descent (IBD) probabilities for biparental, three and four-way crosses. Calculations are based on Hidden Markov Models (HMM) and inheritance vectors. The HMM calculations are implemented in `Rcpp/C++`.\r\n\r\nFor more complicated pedigrees [RABBIT](https://github.com/Biometris/RABBIT) can be used to calculate the IBDs. \r\n\r\n## Installation\r\n\r\n* Install from CRAN:\r\n\r\n```{r, eval = FALSE}\r\ninstall.packages(\"statgenIBD\")\r\n```\r\n\r\n* Install latest development version from GitHub (requires [remotes](https://github.com/r-lib/remotes) package):\r\n\r\n```{r, eval = FALSE}\r\nremotes::install_github(\"Biometris/statgenIBD\", ref = \"develop\", dependencies = TRUE)\r\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiometris%2Fstatgenibd","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fbiometris%2Fstatgenibd","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fbiometris%2Fstatgenibd/lists"}